View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20821_low_35 (Length: 324)

Name: NF20821_low_35
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20821_low_35
NF20821_low_35
[»] chr1 (18 HSPs)
chr1 (16-324)||(8640052-8640360)
chr1 (17-63)||(35203179-35203225)
chr1 (17-61)||(45526202-45526246)
chr1 (17-63)||(35216970-35217016)
chr1 (17-61)||(35206425-35206469)
chr1 (16-60)||(35265360-35265404)
chr1 (17-61)||(35476995-35477039)
chr1 (20-63)||(35192839-35192882)
chr1 (17-60)||(35272922-35272965)
chr1 (17-61)||(35222789-35222833)
chr1 (17-61)||(35295215-35295259)
chr1 (17-61)||(45534406-45534450)
chr1 (25-61)||(19267391-19267427)
chr1 (17-61)||(35213583-35213627)
chr1 (244-312)||(35221163-35221227)
chr1 (17-60)||(35228446-35228489)
chr1 (21-61)||(35145228-35145268)
chr1 (270-322)||(35148331-35148383)
[»] chr2 (1 HSPs)
chr2 (16-61)||(33137661-33137706)
[»] chr7 (2 HSPs)
chr7 (17-61)||(38635327-38635371)
chr7 (17-61)||(38633580-38633624)
[»] chr3 (2 HSPs)
chr3 (17-61)||(17663883-17663927)
chr3 (17-61)||(19246384-19246428)


Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 8640360 - 8640052
Alignment:
Q  16 cagaaagagtggaaaaaagtgttacatgcttgctgctagatctctctcttttggttgggctggcgttgcttgggaagattttgagcaaaatcgtaactgg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8640360 cagaaagagtggaaaaaagtgttacatgcttgctgctagatctctctcttttggttgggctggcgttgcttgggaagattttgagcaaaatcgtaactgg 8640261  T
Q  116 acttctatgccggattccaggtttcctcttaacttttctattatgtgtagtagtatgaagtttaagtaaaaatttgacattcaaccatgatttgaactca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8640260 acttctatgccggattccaggtttcctcttaacttttctattatgtgtagtagtatgaagtttaagtaaaaatttgacattcaaccatgatttgaactca 8640161  T
Q  216 ctagatgaatccagcatcatcatttgaccagttctttcattcaacttcaaactgattgatttctttaaattcattgctatatacttatacctattccgtt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8640160 ctagatgaatccagcatcatcatttgaccagttctttcattcaacttcaaactgattgatttctttaaattcattgctatatacttatacctattccgtt 8640061  T
Q  316 attttatct 324  Q
    |||||||||    
T  8640060 attttatct 8640052  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 35203225 - 35203179
Alignment:
Q  17 agaaagagtggaaaaaagtgttacatgcttgctgctagatctctctc 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  35203225 agaaagagtggaaaaaagtgttacatgcttgctgctagatctctctc 35203179  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 45526246 - 45526202
Alignment:
Q  17 agaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  45526246 agaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 45526202  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 35217016 - 35216970
Alignment:
Q  17 agaaagagtggaaaaaagtgttacatgcttgctgctagatctctctc 63  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  35217016 agaaagagtggaaaaaagtgttacatgctttctgctagatctctctc 35216970  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 35206469 - 35206425
Alignment:
Q  17 agaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 61  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  35206469 agaaagagtggaaaaaagtgttacatgctttctgctagatctctc 35206425  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 35265404 - 35265360
Alignment:
Q  16 cagaaagagtggaaaaaagtgttacatgcttgctgctagatctct 60  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  35265404 cagaaagagtggaaaaaagtgttacatgctttctgctagatctct 35265360  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 35477039 - 35476995
Alignment:
Q  17 agaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 61  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  35477039 agaaagagtgggaaaaagtgttacatgcttgctgctagatctctc 35476995  T

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Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 35192882 - 35192839
Alignment:
Q  20 aagagtggaaaaaagtgttacatgcttgctgctagatctctctc 63  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  35192882 aagagtggaaaaaagtgttatatgcttgctgctagatctctctc 35192839  T

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Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 35272965 - 35272922
Alignment:
Q  17 agaaagagtggaaaaaagtgttacatgcttgctgctagatctct 60  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  35272965 agaaagagtggaaaaaagtgttacatgctttctgctagatctct 35272922  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 35222833 - 35222789
Alignment:
Q  17 agaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 61  Q
    |||||||||||||||||||||  ||||||||||||||||||||||    
T  35222833 agaaagagtggaaaaaagtgtgtcatgcttgctgctagatctctc 35222789  T

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Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 35295215 - 35295259
Alignment:
Q  17 agaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 61  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||    
T  35295215 agaaagagtgggaaaaagtgttatatgcttgctgctagatctctc 35295259  T

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Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 45534450 - 45534406
Alignment:
Q  17 agaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 61  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||    
T  45534450 agaaatagtgggaaaaagtgttacatgcttgctgctagatctctc 45534406  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 19267391 - 19267427
Alignment:
Q  25 tggaaaaaagtgttacatgcttgctgctagatctctc 61  Q
    |||||||||||||||||| ||||||||||||||||||    
T  19267391 tggaaaaaagtgttacattcttgctgctagatctctc 19267427  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 35213627 - 35213583
Alignment:
Q  17 agaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 61  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||||    
T  35213627 agaaaaagtggaaaaaaatgttatatgcttgctgctagatctctc 35213583  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 35221227 - 35221163
Alignment:
Q  244 cagttctttcattcaacttcaaactgattgatttctttaaattcattgctatatacttatacctattcc 312  Q
    |||||| ||||||||| ||||||    ||||||||| | |||||||||||||| |||||||||||||||    
T  35221227 cagttccttcattcaagttcaaa----ttgatttctcttaattcattgctataaacttatacctattcc 35221163  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 35228489 - 35228446
Alignment:
Q  17 agaaagagtggaaaaaagtgttacatgcttgctgctagatctct 60  Q
    |||||||||||||| |||||||| |||||| |||||||||||||    
T  35228489 agaaagagtggaaagaagtgttatatgctttctgctagatctct 35228446  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 35145268 - 35145228
Alignment:
Q  21 agagtggaaaaaagtgttacatgcttgctgctagatctctc 61  Q
    ||||| ||||||||||||||||| || ||||||||||||||    
T  35145268 agagtagaaaaaagtgttacatggtttctgctagatctctc 35145228  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 322
Target Start/End: Complemental strand, 35148383 - 35148331
Alignment:
Q  270 attgatttctttaaattcattgctatatacttatacctattccgttattttat 322  Q
    |||||||| | |||||||||||||||| || |||||| ||||| |||||||||    
T  35148383 attgatttatataaattcattgctataaacatatacccattccattattttat 35148331  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 33137661 - 33137706
Alignment:
Q  16 cagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 61  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  33137661 cagaaagagtggacaaaagtgttacatgcttgctgctagatctctc 33137706  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 38635371 - 38635327
Alignment:
Q  17 agaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 61  Q
    |||||||||||||||||||||||||| |||||||||| |||||||    
T  38635371 agaaagagtggaaaaaagtgttacattcttgctgctaaatctctc 38635327  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 38633624 - 38633580
Alignment:
Q  17 agaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 61  Q
    |||||||||||||||||||||| ||| |||||||||| |||||||    
T  38633624 agaaagagtggaaaaaagtgttgcatccttgctgctaaatctctc 38633580  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 17663883 - 17663927
Alignment:
Q  17 agaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 61  Q
    |||||||||||| | ||||||||| ||||||||||||||||||||    
T  17663883 agaaagagtggacagaagtgttacctgcttgctgctagatctctc 17663927  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 19246384 - 19246428
Alignment:
Q  17 agaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 61  Q
    |||||||||||| | ||||||||| ||||||||||||||||||||    
T  19246384 agaaagagtggacagaagtgttacctgcttgctgctagatctctc 19246428  T

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