View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20821_low_40 (Length: 304)
Name: NF20821_low_40
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_low_40 |
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| [»] scaffold0793 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 31048359 - 31048641
Alignment:
| Q |
18 |
tagacgttgattatcgttgggccgagctgcgtaacccacttaatgttattgttcctctactctctttatcttattgttcttgctttaattgtggatttgt |
117 |
Q |
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||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31048359 |
tagacgttgatcattgttgggccgagctgcataacccacttaatgttattgttcctctactctctttatcttattgttcttgctttaattgtggatttgt |
31048458 |
T |
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| Q |
118 |
tttacacacaaggtgctaagattagatctaaatttcaattttgtgtgatttgagcctgatattattaacacataacacattctttactctaattaataca |
217 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| | || |||||||||||||||||| |||||||||||||||| |
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| T |
31048459 |
tttacacataaggtgctaagattagatctaaatttcaatattgtgtgatttgagcctg--aataataacacataacacattctctactctaattaataca |
31048556 |
T |
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| Q |
218 |
aaacttattacactaccatatccaaacaacagcaacaagtacaacaacaaaatcgatgaaataacataagcatactagtataatc |
302 |
Q |
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| T |
31048557 |
aaacttattacactaccatatccaaacaacagcaacaagtacaacaacaaaatcgatgaaataacagaagcatactagtataatc |
31048641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 31106348 - 31106392
Alignment:
| Q |
258 |
acaacaacaaaatcgatgaaataacataagcatactagtataatc |
302 |
Q |
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| T |
31106348 |
acaacaacaaaatcgatgaaataacaaaagcagactagtataatc |
31106392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 300
Target Start/End: Original strand, 31161346 - 31161388
Alignment:
| Q |
258 |
acaacaacaaaatcgatgaaataacataagcatactagtataa |
300 |
Q |
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| T |
31161346 |
acaacaacgaaatcgatgaaataacaaaagcatactagtataa |
31161388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 300
Target Start/End: Original strand, 31243449 - 31243491
Alignment:
| Q |
258 |
acaacaacaaaatcgatgaaataacataagcatactagtataa |
300 |
Q |
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| T |
31243449 |
acaacaacgaaatcgatgaaataacaaaagcatactagtataa |
31243491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 300
Target Start/End: Original strand, 31143522 - 31143564
Alignment:
| Q |
258 |
acaacaacaaaatcgatgaaataacataagcatactagtataa |
300 |
Q |
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| T |
31143522 |
acaacaatgaaatcgatgaaataacaaaagcatactagtataa |
31143564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0793 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0793
Description:
Target: scaffold0793; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 732 - 781
Alignment:
| Q |
66 |
ttgttcctctactctctttatcttattgttcttgctttaattgtggattt |
115 |
Q |
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|||||| | ||||||||||||||||||||||||||||| |||||| |||| |
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| T |
732 |
ttgttcttgtactctctttatcttattgttcttgctttgattgtgcattt |
781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 709039 - 708990
Alignment:
| Q |
66 |
ttgttcctctactctctttatcttattgttcttgctttaattgtggattt |
115 |
Q |
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| T |
709039 |
ttgttcttgtactctctttatcttattgttcttgctttgattgtgcattt |
708990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 27995011 - 27995043
Alignment:
| Q |
91 |
ttgttcttgctttaattgtggatttgttttaca |
123 |
Q |
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| T |
27995011 |
ttgttcttgctttgattgtggatttgttttaca |
27995043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 28999031 - 28998981
Alignment:
| Q |
66 |
ttgttcctctactctctttatcttattgttcttgctttaattgtggatttg |
116 |
Q |
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||||||||||||| |||||||||||||||||||||| |||| ||||||| |
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| T |
28999031 |
ttgttcctctactacatttatcttattgttcttgctttgattgcggatttg |
28998981 |
T |
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