View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20821_low_47 (Length: 277)
Name: NF20821_low_47
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_low_47 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 277
Target Start/End: Complemental strand, 41827474 - 41827205
Alignment:
| Q |
8 |
cgaagaatatgcaataattaatgtaggataattatcaagaagtgaatataaagcaacaagtaattgatttgaaatggacaagtaataagtaacaataaat |
107 |
Q |
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| T |
41827474 |
cgaaaaatatgcaataattaatgcaggataattatcaagaagtgaatataaagcaacaagtaattgatttgaaatggacaagtaataagtaacaataagt |
41827375 |
T |
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| Q |
108 |
aagtaactaaataatttgattcaagtggttaatgaacgtcagcaaacaacaaaattgttaagaaaatctaagtttgaattatgtgtgaagnnnnnnnaaa |
207 |
Q |
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|||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||| |||||||| ||||||||| ||| |
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| T |
41827374 |
aagtaactaaataatttgattcaaatggttaatgaactttagcaaacaacaaaattgttaagaaaatctaaatttgaattctgtgtgaagtttttttaaa |
41827275 |
T |
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| Q |
208 |
ccaaactttaattactttttcggttaaactttgaattatcaaagtctatttttgaataaagtgctttctt |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
41827274 |
ccaaactttaattactttttcggttaaactttgaattatcaaagtctatttttgaagatagtgctttctt |
41827205 |
T |
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