View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20821_low_48 (Length: 276)

Name: NF20821_low_48
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20821_low_48
NF20821_low_48
[»] chr8 (2 HSPs)
chr8 (1-145)||(9891613-9891757)
chr8 (141-276)||(9891792-9891917)
[»] chr4 (11 HSPs)
chr4 (1-123)||(3671048-3671170)
chr4 (170-276)||(3670876-3670982)
chr4 (1-116)||(52982885-52983000)
chr4 (1-105)||(55657369-55657473)
chr4 (1-90)||(54860810-54860899)
chr4 (9-116)||(55619009-55619116)
chr4 (9-116)||(55626313-55626420)
chr4 (4-107)||(55637318-55637421)
chr4 (1-97)||(54630419-54630515)
chr4 (1-84)||(55663621-55663704)
chr4 (3-104)||(50189997-50190098)
[»] chr2 (1 HSPs)
chr2 (1-133)||(13403722-13403854)
[»] chr1 (1 HSPs)
chr1 (18-122)||(37308569-37308673)
[»] chr7 (1 HSPs)
chr7 (18-82)||(46153223-46153287)


Alignment Details
Target: chr8 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 9891613 - 9891757
Alignment:
Q  1 aaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgct 100  Q
    ||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  9891613 aaaagattgaaaacttgcagagtcatgacaactatgaaatttatgggaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgcc 9891712  T
Q  101 acctccaggcaatggttctcaacctggttttaactttagaagcag 145  Q
    | |||||||||||||||||||||||||||||||||||||| ||||    
T  9891713 atctccaggcaatggttctcaacctggttttaactttagaggcag 9891757  T

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Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 141 - 276
Target Start/End: Original strand, 9891792 - 9891917
Alignment:
Q  141 agcagaatgtgaccattgttgcaaggaaccaaggaaccatgacgagtggtttctttgatgccagcttggattctatcctttattgagtcgtagtttttat 240  Q
    |||||||||||||||||||||||||||||          |||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  9891792 agcagaatgtgaccattgttgcaaggaacg---------tgacgagtggtttctttgatgc-agcttggattctatcctttattaagttgtagtttttat 9891881  T
Q  241 tggtaactagtgtgtaagatgggcattctcgtgcct 276  Q
    |||||||||||||||||||||| |||||||||||||    
T  9891882 tggtaactagtgtgtaagatggccattctcgtgcct 9891917  T

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Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 3671170 - 3671048
Alignment:
Q  1 aaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgct 100  Q
    ||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3671170 aaaagattggaaacttgcagagtcatgacaactatgaaatttatgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgct 3671071  T
Q  101 acctccaggcaatggttctcaac 123  Q
    |||||||||||||||||||||||    
T  3671070 acctccaggcaatggttctcaac 3671048  T

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Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 3670982 - 3670876
Alignment:
Q  170 caaggaaccatgacgagtggtttctttgatgccagcttggattctatcctttattgagtcgtagtttttattggtaactagtgtgtaagatgggcattct 269  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  3670982 caaggaactgtgacgagtggtttctttgatgccagcttggattctatcctttattgagtcgtagtttttattgacaactagtgtgtaagatgggcattct 3670883  T
Q  270 cgtgcct 276  Q
    |||||||    
T  3670882 cgtgcct 3670876  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 52983000 - 52982885
Alignment:
Q  1 aaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgct 100  Q
    ||||||||||||||||||||||||||||||||  |||||||| |||||| ||||| | |||||| ||||||||||||||||||||||||| |||||| ||    
T  52983000 aaaagattgaaaacttgcagagtcatgacaacaatgaaatttatgagaatgctgttagaattctcgagacatattggttggaagatgaagatgagacact 52982901  T
Q  101 acctccaggcaatggt 116  Q
    ||||||| || |||||    
T  52982900 acctccaagccatggt 52982885  T

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Target: chr4; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 55657473 - 55657369
Alignment:
Q  1 aaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgct 100  Q
    ||||||| ||||||||||||||||||||||||  |||||||| |||||||||||| |||||||||||||||||||||||||||||||  | |||||| ||    
T  55657473 aaaagatcgaaaacttgcagagtcatgacaacaatgaaatttatgagaaggctgttaaaattcttgagacatattggttggaagatgttgatgagacact 55657374  T
Q  101 acctc 105  Q
    |||||    
T  55657373 acctc 55657369  T

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Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 54860899 - 54860810
Alignment:
Q  1 aaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaag 90  Q
    |||||||||| ||| |||||| ||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  54860899 aaaagattgataacatgcagaatcatgacaactatgaaatttatgagaaggctgttaaaattcttgagacatattggttggaagatgaag 54860810  T

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Target: chr4; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 55619116 - 55619009
Alignment:
Q  9 gaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccag 108  Q
    ||||||||||||||||||||||||   ||||||| |||||||||||| |||||||| |||||||||||||||||||||| || |||||| ||||||| ||    
T  55619116 gaaaacttgcagagtcatgacaacaaagaaatttatgagaaggctgttaaaattctcgagacatattggttggaagatgtagatgagacactacctctag 55619017  T
Q  109 gcaatggt 116  Q
    || |||||    
T  55619016 gccatggt 55619009  T

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Target: chr4; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 55626420 - 55626313
Alignment:
Q  9 gaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccag 108  Q
    ||||||||||||||||||||||||   ||||||| |||||||||||| |||||||| |||||||||||||||||||||| || |||||| ||||||| ||    
T  55626420 gaaaacttgcagagtcatgacaacaaagaaatttatgagaaggctgttaaaattctcgagacatattggttggaagatgtagatgagacactacctctag 55626321  T
Q  109 gcaatggt 116  Q
    || |||||    
T  55626320 gccatggt 55626313  T

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Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 55637318 - 55637421
Alignment:
Q  4 agattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacc 103  Q
    |||||||||||||||||||||||||||||  ||||||| ||||||||||||| ||||||||||| |||||||||||  |||||||||  |||||  ||||    
T  55637318 agattgaaaacttgcagagtcatgacaacaatgaaattcgtgagaaggctgttaaaattcttgaaacatattggtttaaagatgaagacgagacagtacc 55637417  T
Q  104 tcca 107  Q
    ||||    
T  55637418 tcca 55637421  T

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Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 54630419 - 54630515
Alignment:
Q  1 aaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagac 97  Q
    ||||||||||||||||| | ||||||||  || | ||||||| |||||||||||  |||||||| |||| |||||||||||||||||||| ||||||    
T  54630419 aaaagattgaaaacttggatagtcatgaagacagagaaatttatgagaaggctgctaaaattctcgagagatattggttggaagatgaagatgagac 54630515  T

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Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 55663704 - 55663621
Alignment:
Q  1 aaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaag 84  Q
    |||||||||||||||||||||||||  || ||  |||||||| |||||||||||| | |||  | |||||||||||||||||||    
T  55663704 aaaagattgaaaacttgcagagtcacaaccacattgaaatttatgagaaggctgttagaatcgtcgagacatattggttggaag 55663621  T

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Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 50190098 - 50189997
Alignment:
Q  3 aagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctac 102  Q
    ||||| |||||| |||| |||||||| |||   ||||| | |||||||||||| ||||||||||| |||||||||| | | ||||||| ||||| |||||    
T  50190098 aagatagaaaacctgcaaagtcatgataaccaagaaatatatgagaaggctgttaaaattcttgaaacatattggtcgaacgatgaagatgagatgctac 50189999  T
Q  103 ct 104  Q
    ||    
T  50189998 ct 50189997  T

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Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 13403722 - 13403854
Alignment:
Q  1 aaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgct 100  Q
    |||||||||| ||| |||||||||||||||||  ||||||||  ||||||||||| |||||||| |||||||||||||||||||||||||  ||||| ||    
T  13403722 aaaagattgagaacctgcagagtcatgacaacaatgaaatttacgagaaggctgttaaaattctcgagacatattggttggaagatgaagacgagacact 13403821  T
Q  101 acctccaggcaatggttctcaacctggttttaa 133  Q
    ||| |||||| ||||||||||||||||||||||    
T  13403822 accaccaggcgatggttctcaacctggttttaa 13403854  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 37308673 - 37308569
Alignment:
Q  18 cagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggtt 117  Q
    |||||||||||||||   || |||| ||| |||||||| || |||||||||||||| |||||||| || |||| ||||||  | ||||||||| ||| ||    
T  37308673 cagagtcatgacaacacagagatttatgaaaaggctgtgaagattcttgagacatactggttggaggaagaagatgagaccatgcctccaggcgatgctt 37308574  T
Q  118 ctcaa 122  Q
    |||||    
T  37308573 ctcaa 37308569  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 46153287 - 46153223
Alignment:
Q  18 cagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttgga 82  Q
    |||||||||||||||  ||| |||| ||| |||||||| || ||||| |||||||| ||||||||    
T  46153287 cagagtcatgacaacaatgagatttatgaaaaggctgtgaagattctcgagacatactggttgga 46153223  T

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