View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20821_low_49 (Length: 275)
Name: NF20821_low_49
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 8270437 - 8270192
Alignment:
| Q |
19 |
gttaacccacttggagggccatattgtaagttgcttcgtactagtaataggacaagaagttcattggtccataaacaatttactcctcacattgatgagt |
118 |
Q |
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| T |
8270437 |
gttaacccacttggagggccatattgtaagttgtttcgtactagtaataggacaagaagttcattggtccataaacaatttactcctcacattgatgagt |
8270338 |
T |
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| Q |
119 |
gatgacatctcatatcatagtcacacaattcctcttatcacacaacacatacacgtcctcaccctcaccaatactttgaacttccaattttatgtccctg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8270337 |
gatgacatctcatatcatagtcacacaattcctcttatcacacaacacatacacgtcctcaccctcaccaatactttgaacttccaattttatgtccctg |
8270238 |
T |
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| Q |
219 |
atttaagcttgtctagtgtctacctacccgttttaactaccttcat |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8270237 |
atttaagcttgtctagtgtctacctacccgttttaactaccttcat |
8270192 |
T |
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