View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20821_low_5 (Length: 619)

Name: NF20821_low_5
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20821_low_5
NF20821_low_5
[»] chr2 (6 HSPs)
chr2 (18-609)||(32635581-32636165)
chr2 (345-609)||(32616901-32617165)
chr2 (21-110)||(45340793-45340882)
chr2 (199-268)||(45340586-45340654)
chr2 (298-344)||(7732226-7732272)
chr2 (178-250)||(38701842-38701914)
[»] chr6 (2 HSPs)
chr6 (178-281)||(6346815-6346918)
chr6 (178-264)||(2567498-2567584)
[»] scaffold0554 (1 HSPs)
scaffold0554 (178-260)||(7350-7432)
[»] chr7 (2 HSPs)
chr7 (178-264)||(24731712-24731798)
chr7 (196-264)||(7711332-7711400)
[»] chr5 (3 HSPs)
chr5 (178-264)||(30655133-30655219)
chr5 (301-344)||(11573578-11573621)
chr5 (208-281)||(15160427-15160500)
[»] chr3 (1 HSPs)
chr3 (178-264)||(36084541-36084627)
[»] chr8 (1 HSPs)
chr8 (23-111)||(29386703-29386791)
[»] chr4 (1 HSPs)
chr4 (199-281)||(2549300-2549382)


Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 609
Target Start/End: Complemental strand, 32636165 - 32635581
Alignment:
Q  18 acaatgtatttgttattttcatcatcggtcaattttaactgatt-gcaatcttagaaatcacatatcttaatgttttagttattgatctacactagttat 116  Q
    |||||||||||||||||||||||||| || ||||||| |||||| |||||||| ||| |||||| ||||||||||||||| |||||||||||||  ||||    
T  32636165 acaatgtatttgttattttcatcatcagtaaattttagctgatttgcaatctttgaagtcacatgtcttaatgttttagtgattgatctacactttttat 32636066  T
Q  117 tctctatttagaaatatttatgcaagcagaattagctccaaattagctacgaatcatatatcattttttaaatgttactagaaatactctcaagtgtttc 216  Q
    || |||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||| |||||||||||||||      |    
T  32636065 tcactatttagaaatatttatgcaagcagaattagctacaaattagctactaaacatatatcattttttaaatgttattagaaatactctcaa------c 32635972  T
Q  217 taaaaccatttagcaacataggttttacctaacacttatcaaatgttattaattttaaatagtaaacannnnnnnnnatacttactaacatttttcaaat 316  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||| ||         ||||||| |||||||||||||||    
T  32635971 taaaaccatttagcaacataggttttacctaacacttatcaaatattactaaatttaaatagtaa-cattgttttt-atacttagtaacatttttcaaat 32635874  T
Q  317 attactaaatgtcatatatgttgtagtggactgacagaggaacatgactaacctcatacatagtgtgagaagtattactgcnnnnnnngtggctagcttc 416  Q
    |||| |||||||||||||||||| ||| |||||| ||||||||| |||||||||||||||| ||||||||||| ||||| |       ||||||||||||    
T  32635873 attattaaatgtcatatatgttgcagttgactgagagaggaacacgactaacctcatacatcgtgtgagaagtgttactactttttttgtggctagcttc 32635774  T
Q  417 tttgattgctgaggttgcttctctaaaatttgtagccaaagggactaaaatgaaagagatgaaaaatgatgaaattcctgcagcttcagagaatttttga 516  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32635773 tttgatagctgaggttgcttctctaaaatttgtagccaaagggactaaaatgaaagagatgaaaaatgatgaaattcctgcagcttcggagaatttttga 32635674  T
Q  517 acacttgctattagaggctctgcaagaagtgacaacatagcaattcccaacatcacgtatgctatagcttctaaccatgcagtcacccctttg 609  Q
    |||||||||||||||||||| ||||||| ||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  32635673 acacttgctattagaggctccgcaagaattgacaacatagtaattcccaacaccacatatgctatagcttctaaccatgcagtcacccctttg 32635581  T

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Target: chr2; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 345 - 609
Target Start/End: Complemental strand, 32617165 - 32616901
Alignment:
Q  345 gactgacagaggaacatgactaacctcatacatagtgtgagaagtattactgcnnnnnnngtggctagcttctttgattgctgaggttgcttctctaaaa 444  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  32617165 gactgacagaggaacatgactaacctcatacatagtgtgagaagtattactgctttttttgtggctagcttctttgattgctgaggttgcttctctaaaa 32617066  T
Q  445 tttgtagccaaagggactaaaatgaaagagatgaaaaatgatgaaattcctgcagcttcagagaatttttgaacacttgctattagaggctctgcaagaa 544  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32617065 tttgtagccaaagggactaaaatgaaagagatgaaaaatgatgaaattcctgcagcttcagagaatttttgaacacttgctattagaggctccgcaagaa 32616966  T
Q  545 gtgacaacatagcaattcccaacatcacgtatgctatagcttctaaccatgcagtcacccctttg 609  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32616965 gtgacaacatagcaattcccaacatcacgtatgctatagcttctaaccatgcagtcacccctttg 32616901  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 45340882 - 45340793
Alignment:
Q  21 atgtatttgttattttcatcatcggtcaattttaactgattgcaatcttagaaatcacatatcttaatgttttagttattgatctacact 110  Q
    ||||||||||||||||||| | |  | ||||||| ||  ||| |||||| |||||||||||||||||||||| ||| |||||||||||||    
T  45340882 atgtatttgttattttcattaccaattaattttagcttgttggaatctttgaaatcacatatcttaatgtttaagtgattgatctacact 45340793  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 199 - 268
Target Start/End: Complemental strand, 45340654 - 45340586
Alignment:
Q  199 aatactctcaagtgtttctaaaaccatttagcaacataggttttacctaacacttatcaaatgttattaa 268  Q
    |||||| ||||||||| |||||||||||||| | |||||||||| ||||||| || ||||||||||||||    
T  45340654 aatactatcaagtgttactaaaaccatttagaagcataggttttgcctaaca-ttttcaaatgttattaa 45340586  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 344
Target Start/End: Complemental strand, 7732272 - 7732226
Alignment:
Q  298 ttactaacatttttcaaatattactaaatgtcatatatgttgtagtg 344  Q
    ||||||||||||||||| | ||||||||| |||||||||||||||||    
T  7732272 ttactaacatttttcaagtgttactaaatctcatatatgttgtagtg 7732226  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 38701842 - 38701914
Alignment:
Q  178 cattttttaaatgttactagaaatactctcaagtgtttctaaaaccatttagcaacataggttttacctaaca 250  Q
    ||||||||| || ||||||| |||||||||||| ||| |||||  ||||||| ||||  ||||||||| ||||    
T  38701842 cattttttatatattactagtaatactctcaagggttactaaagtcatttagtaacaccggttttaccaaaca 38701914  T

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Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 281
Target Start/End: Original strand, 6346815 - 6346918
Alignment:
Q  178 cattttttaaatgttactagaaatactctcaagtgtttctaaaaccatttagcaacataggttttacctaacacttatcaaatgttattaattttaaata 277  Q
    |||||||||  ||||||  | ||||| |||||||||| || ||| ||||||| |||||||| ||||||||||| |||||||||||||  || ||||||||    
T  6346815 cattttttaggtgttacatgtaataccctcaagtgttacttaaatcatttagtaacataggctttacctaacatttatcaaatgttacaaaatttaaata 6346914  T
Q  278 gtaa 281  Q
    ||||    
T  6346915 gtaa 6346918  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 2567584 - 2567498
Alignment:
Q  178 cattttttaaatgttactagaaatactctcaagtgtttctaaaaccatttagcaacataggttttacctaacacttatcaaatgtta 264  Q
    ||||||| ||||| |||||  || ||||||||| ||| |||||||||||||| ||||  |  |||||| |||| |||||||||||||    
T  2567584 catttttaaaatgatactaagaagactctcaagggttactaaaaccatttagtaacacggactttaccaaacatttatcaaatgtta 2567498  T

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Target: scaffold0554 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 7432 - 7350
Alignment:
Q  178 cattttttaaatgttactagaaatactctcaagtgtttctaaaaccatttagcaacataggttttacctaacacttatcaaat 260  Q
    |||||||||||||||||||  || ||||| |||  || |||||||||||||| ||||| || ||||||||||| |||||||||    
T  7432 cattttttaaatgttactaataagactcttaaggattactaaaaccatttagtaacattggctttacctaacatttatcaaat 7350  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 24731712 - 24731798
Alignment:
Q  178 cattttttaaatgttactagaaatactctcaagtgtttctaaaaccatttagcaacataggttttacctaacacttatcaaatgtta 264  Q
    ||||||||||   |||| || ||||||| |||||||| || ||| ||||||| ||||| |||||||||||||| |||||||||||||    
T  24731712 cattttttaagccttacaaggaatactcacaagtgttactgaaatcatttagtaacatgggttttacctaacatttatcaaatgtta 24731798  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 7711332 - 7711400
Alignment:
Q  196 agaaatactctcaagtgtttctaaaaccatttagcaacataggttttacctaacacttatcaaatgtta 264  Q
    ||||||||||||||||||| || ||| ||||||| ||||  || ||||||||||| | |||||||||||    
T  7711332 agaaatactctcaagtgttactgaaatcatttagtaacacgggctttacctaacattcatcaaatgtta 7711400  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 30655133 - 30655219
Alignment:
Q  178 cattttttaaatgttactagaaatactctcaagtgtttctaaaaccatttagcaacataggttttacctaacacttatcaaatgtta 264  Q
    |||||||||| |||||| || |||||| ||||||||| || ||| ||||||| ||||  || ||||||||||| |||||||||||||    
T  30655133 cattttttaagtgttacaagtaatactttcaagtgttactgaaatcatttagtaacaccggctttacctaacatttatcaaatgtta 30655219  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 344
Target Start/End: Complemental strand, 11573621 - 11573578
Alignment:
Q  301 ctaacatttttcaaatattactaaatgtcatatatgttgtagtg 344  Q
    ||||||||| ||||||| |||||||| |||||||||||||||||    
T  11573621 ctaacatttatcaaataatactaaatttcatatatgttgtagtg 11573578  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 281
Target Start/End: Complemental strand, 15160500 - 15160427
Alignment:
Q  208 aagtgtttctaaaaccatttagcaacataggttttacctaacacttatcaaatgttattaattttaaatagtaa 281  Q
    ||||||| || ||| ||||||| ||||| || ||||||||||| |||||||||||||  |  ||||||||||||    
T  15160500 aagtgttactgaaatcatttagtaacatgggctttacctaacatttatcaaatgttacaagatttaaatagtaa 15160427  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 36084627 - 36084541
Alignment:
Q  178 cattttttaaatgttactagaaatactctcaagtgtttctaaaaccatttagcaacataggttttacctaacacttatcaaatgtta 264  Q
    |||||||||| |||||| ||  ||||||| ||||||| || ||| ||||||| |||||||| ||||||||||| || ||||||||||    
T  36084627 cattttttaagtgttacaagtgatactctaaagtgttactgaaatcatttagtaacataggctttacctaacatttgtcaaatgtta 36084541  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 29386791 - 29386703
Alignment:
Q  23 gtatttgttattttcatcatcggtcaattttaactgattgcaatcttagaaatcacatatcttaatgttttagttattgatctacacta 111  Q
    |||||||||||||| || |||  ||||||||| ||  ||| |||||| ||||||| |||||||||||||||| | |||||| |||||||    
T  29386791 gtatttgttattttaattatcaatcaattttaccttgttgaaatctttgaaatcaaatatcttaatgttttactgattgatatacacta 29386703  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 199 - 281
Target Start/End: Complemental strand, 2549382 - 2549300
Alignment:
Q  199 aatactctcaagtgtttctaaaaccatttagcaacataggttttacctaacacttatcaaatgttattaattttaaatagtaa 281  Q
    |||||||||||||||| || ||| ||||||| ||||  |||||||||||||| || |||||| |||  |  ||||||||||||    
T  2549382 aatactctcaagtgttactgaaatcatttagtaacacgggttttacctaacatttgtcaaatattacaagatttaaatagtaa 2549300  T

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