View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20821_low_51 (Length: 273)
Name: NF20821_low_51
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_low_51 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 8639727 - 8639969
Alignment:
| Q |
12 |
atgaacctatttgcccaatttttgaatcaaaacaaaacttgttagaaagcacagaggggtagaagaagtgcataaacatagtagccttgggctgtaggca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8639727 |
atgaacctatttgcccaatttttgaatcaaaacaaaacttgttagaaagcacagaggggtagaagaagtgcataaacatagtagccttaggctgtaggca |
8639826 |
T |
|
| Q |
112 |
cttgaatnnnnnnnnnnnnnntagttagtgatgagtgatgactaacaaacaaacaaaaatgaaaattcaaagcttttttccattgccaaatgcccaactc |
211 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8639827 |
cttgaataaaaaaagggggggtagttagtgatgagtgatgactaacaaacaaacaaaaatgaaaattcaaagcttttttccattgccaaatgcccaactc |
8639926 |
T |
|
| Q |
212 |
cggattcctgagtacattgtgatactttatttgaaacgtaagt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8639927 |
tggattcctgagtacattgtgatactttatttgaaacgtaagt |
8639969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University