View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20821_low_52 (Length: 273)
Name: NF20821_low_52
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_low_52 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 52001528 - 52001780
Alignment:
| Q |
18 |
catcaagcgaagcaagtccatcaacatgattggcaagaattttaagagacatttctagcagtgaaggaacacataatcttcccctcacaaaatcttcacc |
117 |
Q |
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| T |
52001528 |
catcaagcgaagcaagtccatcaacatgattggcaagaattttaagagacatttctagcagtgaaggaacacataatcttcccctcacaaaatcttcacc |
52001627 |
T |
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| Q |
118 |
attcagttttgaaacccaagtaagggattcatcaacaaacccccttttgttgcttttagtaattcgttcttgaatagctttgactgctttagagaaagga |
217 |
Q |
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| T |
52001628 |
attcagttttgaaacccaagtaagggattcatcgacaaacccccttttgttgcttttagtaattcgttcttgaatagctttgactgctttagagaaagga |
52001727 |
T |
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| Q |
218 |
gttggagaatcatcatcatcaatttcatgttccacatcatcatctttttctttatt |
273 |
Q |
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| T |
52001728 |
gttggaga---atcatcatcaacttcatgttccacatcatcatctttttctttatt |
52001780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 52011393 - 52011639
Alignment:
| Q |
18 |
catcaagcgaagcaagtccatcaacatgattggcaagaattttaagagacatttctagcagtgaaggaacacataatcttcccctcacaaaatcttcacc |
117 |
Q |
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| T |
52011393 |
catcaagcgaaaccattccatcagcatggttagcaagaattttaagagacatttcttgcaacgaaggaaccctaaacctttccctcaccaaatcttctcc |
52011492 |
T |
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| Q |
118 |
attcagttttgaaacccaagtaagggattcatcaacaaacccccttttgttgcttttagtaattcgttcttgaatagctttgactgctttagagaaagga |
217 |
Q |
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| T |
52011493 |
gtttcttttcggaacccaaataaaggattccttaacaaccccttttttcttgcttttcgcaattcgttcctgaatagctttgattgcttcagagaaaggt |
52011592 |
T |
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| Q |
218 |
gttggaga---atcatcatcatcaatttcatgttccacatcatcatc |
261 |
Q |
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| T |
52011593 |
gttggagaagcatcatcaacatcaacttcatgttccacatcatcatc |
52011639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 51988104 - 51987866
Alignment:
| Q |
19 |
atcaagcgaagcaagtccatcaacatgattggcaagaattttaagagacatttctagcagtgaaggaacacataatcttcccctcacaaaatcttcacca |
118 |
Q |
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| T |
51988104 |
atcaagcgaagcaatggcatcagcatggttcgcaagaatgttaaggcacaattcttgcaatgaaggaacactaaagcttctcttttccaaatcttcttca |
51988005 |
T |
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| Q |
119 |
ttcagttttgaaacccaagtaagggattcatcaacaaacccccttttgttgcttttagtaattcgttcttgaatagctttgactgctttagagaaaggag |
218 |
Q |
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| T |
51988004 |
ttgaattttgaatgccaaataagagattcatcaacaagcccttttttcatgcttttggcgattctttcttgaatagctttaattgctttagagaaaggtg |
51987905 |
T |
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| Q |
219 |
ttggagaatcatcatcatcaatttcatgttccacatcatcat |
260 |
Q |
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| T |
51987904 |
ttggaga---accatcatcagtttcatgttccatatcatcat |
51987866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 34 - 235
Target Start/End: Original strand, 11749218 - 11749419
Alignment:
| Q |
34 |
tccatcaacatgattggcaagaattttaagagacatttctagcagtgaaggaacacataatcttcccctcacaaaatcttcaccattcagttttgaaacc |
133 |
Q |
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||||||||||||||| ||||| ||||| ||||| |||| || |||||||||||| || |||| |||| |||||||| |||||| ||| | |||| |
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| T |
11749218 |
tccatcaacatgattagcaagggctttaaaagacaattcttccaatgaaggaacacaaaaccttctattcaccaaatcttctccattccttttcggaacc |
11749317 |
T |
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| Q |
134 |
caagtaagggattcatcaacaaacccccttttgttgcttttagtaattcgttcttgaatagctttgactgctttagagaaaggagttggagaatcatcat |
233 |
Q |
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||| ||||||||||||||||||||||| |||| ||| |||| | ||||||||||||||||||||||| || || |||||||||||||||||| |||||| |
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| T |
11749318 |
caaataagggattcatcaacaaaccccattttcttggttttggcaattcgttcttgaatagctttgattgtttcggagaaaggagttggagaaccatcat |
11749417 |
T |
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| Q |
234 |
ca |
235 |
Q |
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|| |
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| T |
11749418 |
ca |
11749419 |
T |
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