View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20821_low_56 (Length: 256)
Name: NF20821_low_56
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 2692995 - 2692774
Alignment:
| Q |
16 |
atggatagatagtttaagaaataaaagataataacccggaatgacatgccaccacatggaatatatttattttttcgatacacaaatatcattggtacat |
115 |
Q |
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| T |
2692995 |
atggatagatagtttaagaaataaaagataataacccggaatgacatgccaccacatggaatatatttattttttcgatacacaaatatcattggtacat |
2692896 |
T |
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| Q |
116 |
caagagcataatcaacaaactgctcaaacctgttgcaaaatcacacaccaaatcaaaccacactttttgtgtttgaattttatttaaaacttagaaaagt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2692895 |
caagagcataatcaacaaactgctcaaacctgttgcaaaatcacacaccaaatcaaaccacactttttgtgtttgaattttatttaaaacttagaaaagt |
2692796 |
T |
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| Q |
216 |
aaagataaacatacccaaaagt |
237 |
Q |
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|||||||||||||||||||||| |
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| T |
2692795 |
aaagataaacatacccaaaagt |
2692774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 172
Target Start/End: Complemental strand, 2684647 - 2684504
Alignment:
| Q |
26 |
agtttaagaaataaaagataataacccggaatgacatgccaccacatggaatatatttattttttcgatacacaaatatcattggtacatcaagagcata |
125 |
Q |
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||||||||||||| ||||| | |||||||||||||||||||||| | ||||||| ||||||||||||| | ||||| ||| ||||||||||||||||| |
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| T |
2684647 |
agtttaagaaatagaagatta---cccggaatgacatgccaccacaagcaatatatctattttttcgataaataaataccatcggtacatcaagagcata |
2684551 |
T |
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| Q |
126 |
atcaacaaactgctcaaacctgttgcaaaatcacacaccaaatcaaa |
172 |
Q |
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|||| ||| ||||||||||||| | | || |||||| ||||||||| |
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| T |
2684550 |
gtcaataaattgctcaaacctgtaggagaagcacacaacaaatcaaa |
2684504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 147
Target Start/End: Original strand, 40924779 - 40924850
Alignment:
| Q |
76 |
atatatttattttttcgatacacaaatatcattggtacatcaagagcataatcaacaaactgctcaaacctg |
147 |
Q |
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|||||||| ||||| ||||| ||||| |||||| |||||||||||| ||||||| |||||||||||||| |
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| T |
40924779 |
atatatttctttttccgatagacaaaatacattggaacatcaagagcaaaatcaacgtactgctcaaacctg |
40924850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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