View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20821_low_59 (Length: 253)
Name: NF20821_low_59
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_low_59 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 28383557 - 28383773
Alignment:
| Q |
18 |
caaaattagcccctgttctagtaatcctggatgagttaaaatggtttattggaatgattagtcgatcaacattttatggctaaagcaaatataatttaac |
117 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28383557 |
caaaatcagcccctgttctagtaatcctggatgagttaaaatggtttattggaatgattagtcgatcaacattgtatggctaaagcaaatataatttaac |
28383656 |
T |
|
| Q |
118 |
atttttcttgnnnnnnncaggacctgacatgacattagagtatgctactatatgtctgtttgactagatgaatataaccttgagtaaattgtgagtcaaa |
217 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||| |
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| T |
28383657 |
atttttcttgaaaaaaacaggacctgacatgacattagagtatgctactatatatctgtttgattagatgaatataacct-----------tgagtcaaa |
28383745 |
T |
|
| Q |
218 |
tatagagttttattcccataagtataat |
245 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
28383746 |
tatagagttttattcccataagtataat |
28383773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 28388180 - 28388354
Alignment:
| Q |
18 |
caaaattagcccctgttctagtaatcctggatgagttaaaatggtttattggaatgattagtcgatcaacattttatggctaaagcaaatataatttaac |
117 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28388180 |
caaaattagcccttgttctagtaatcctggatgagttaaagtagtttattggaatgattagtcgatcaacattttatggctaaagcaaatataatttaac |
28388279 |
T |
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| Q |
118 |
atttttcttgnnnnnnncaggacctgacatgacattagagtatgctactatatgtctgtttgactagatgaatat |
192 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
28388280 |
atttttcttgaaaaaaacaggacctgacatgacattagagtatgctactatctgtctatttgactagatgaatat |
28388354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 16420961 - 16421186
Alignment:
| Q |
18 |
caaaattagcccct-gttctagtaatcctggatgagttaaaatggtttattggaatgattagtcgatcaacattttatggctaaagcaaatataatttaa |
116 |
Q |
| |
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|||||| ||||||| |||||||||||| || |||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||| || |
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| T |
16420961 |
caaaatcagccccttgttctagtaatcttgaatgagttaaaatggtttattagaatgattagtcgatcaaaattttatggttaaagcaaatataattgaa |
16421060 |
T |
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| Q |
117 |
catttttcttgnnnnnnncaggacctgacatgacattagagtatgctactatatgtctgtttgactagatgaatataaccttgagtaaattgtgag-tca |
215 |
Q |
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| ||||||| || ||||||| |||||| |||||||||||||||| | | |||||||||||||||||||||||||||||||||| |||| | | |
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| T |
16421061 |
c--ttttcttataattaacaagacctgatatgacaatagagtatgctactatctatatgtttgactagatgaatataaccttgagtaaattttgagttaa |
16421158 |
T |
|
| Q |
216 |
aatatagagttttattcccataagtata |
243 |
Q |
| |
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|| ||| ||||||||| ||| ||||||| |
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| T |
16421159 |
aaaatatagttttatttccagaagtata |
16421186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 28392593 - 28392649
Alignment:
| Q |
189 |
atataaccttgagtaaattgtgagtcaaatatagagttttattcccataagtataat |
245 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28392593 |
atataaccttgagtaaattgtgagtcaaatatagagttttattcccaaaagtataat |
28392649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 9673 - 9898
Alignment:
| Q |
18 |
caaaattagcccct-gttctagtaatcctggatgagttaaaatggtttattggaatgattagtcgatcaacattttatggctaaagcaaatataatttaa |
116 |
Q |
| |
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|||||| ||||||| |||||||||||| || |||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||| || |
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| T |
9673 |
caaaatcagccccttgttctagtaatcttgaatgagttaaaatggtttattagaatgattagtcgatcaaaattttatggttaaagcaaatataattgaa |
9772 |
T |
|
| Q |
117 |
catttttcttgnnnnnnncaggacctgacatgacattagagtatgctactatatgtctgtttgactagatgaatataaccttgagtaaattgtgag-tca |
215 |
Q |
| |
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| ||||||| || ||||||| |||||| |||||||||||||||| | | |||||||||||||||||||||||||||||||||| |||| | | |
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| T |
9773 |
c--ttttcttataattaacaagacctgatatgacaatagagtatgctactatctatatgtttgactagatgaatataaccttgagtaaattttgagttaa |
9870 |
T |
|
| Q |
216 |
aatatagagttttattcccataagtata |
243 |
Q |
| |
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|| ||| ||||||||| ||| ||||||| |
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| T |
9871 |
aaaatatagttttatttccagaagtata |
9898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 3509142 - 3509368
Alignment:
| Q |
18 |
caaaattagcccct-gttctagtaatcctggatgagttaaaatggtttattggaatgattagtcgatcaacattttatggctaaagcaaatataatttaa |
116 |
Q |
| |
|
|||||| ||||||| |||||||||||| || |||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||| || |
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| T |
3509142 |
caaaatcagccccttgttctagtaatcttgaatgagttaaaatggtttattagaatgattagtcgatcaaaattttatggttaaagcaaatataattgaa |
3509241 |
T |
|
| Q |
117 |
catttttcttgnnnnnnncaggacctgacatgacattagagtatgctactatatgtctgtttgactagatgaatataaccttgagtaaattgtgagt--c |
214 |
Q |
| |
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| ||||||| || ||||||| |||||| |||||||||||||||| | | |||||||||||||||||||||||||||||||||| ||||| |
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| T |
3509242 |
c--ttttcttataattaacaagacctgatatgacaatagagtatgctactatctatatgtttgactagatgaatataaccttgagtaaattttgagttaa |
3509339 |
T |
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| Q |
215 |
aaatatagagttttattcccataagtata |
243 |
Q |
| |
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||| ||| ||||||||| ||| ||||||| |
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| T |
3509340 |
aaaaatatagttttatttccagaagtata |
3509368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 34136897 - 34136832
Alignment:
| Q |
153 |
tagagtatgctactatatgtctgttt-gactagatgaatataaccttgagtaaattgtgagtcaaa |
217 |
Q |
| |
|
|||||| ||||||| | ||||||||| |||||||||||||| |||||||||||||| ||||||||| |
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| T |
34136897 |
tagagtttgctactttgtgtctgttttgactagatgaatatgaccttgagtaaattttgagtcaaa |
34136832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 34128398 - 34128336
Alignment:
| Q |
31 |
tgttctagtaatcctggatgagttaaaatggtttattggaatgattagtcgatcaacattttat |
94 |
Q |
| |
|
||||||||| ||||| | ||||||||||||| |||||||||||| || |||||||| ||||||| |
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| T |
34128398 |
tgttctagttatccttggtgagttaaaatgg-ttattggaatgactaatcgatcaaaattttat |
34128336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 5537804 - 5537581
Alignment:
| Q |
18 |
caaaattagcccct-gttctagtaatcctggatgagttaaaatggtttattggaatgattagtcgatcaacattttatggctaaagcaaatataatttaa |
116 |
Q |
| |
|
||||| |||||||| |||||||||||| || |||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||| || |
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| T |
5537804 |
caaaactagccccttgttctagtaatcttgaatgagttaaaatggtttattagaatgattagtcgatcaaaattttatggttaaagcaaatataattgaa |
5537705 |
T |
|
| Q |
117 |
catttttcttgnnnnnnncaggacctgacatgacattagagtatgctactatatgtctgtttgactagatgaatataaccttgagtaaattgtgagt-ca |
215 |
Q |
| |
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| ||||||| || ||||||| |||||| |||||||||||||||| | | |||||||||||||||||||||||||||||||||| ||||| | |
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| T |
5537704 |
c--ttttctt--aattaacaagacctgatatgacaatagagtatgctactatctatatgtttgactagatgaatataaccttgagtaaattttgagtaaa |
5537609 |
T |
|
| Q |
216 |
aatatagagttttattcccataagtata |
243 |
Q |
| |
|
|| ||| ||||||||| ||| ||||||| |
|
|
| T |
5537608 |
aaaatatagttttatttccagaagtata |
5537581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 11992680 - 11992624
Alignment:
| Q |
31 |
tgttctagtaatcctggatgagttaaaatggtttattggaatgattag-tcgatcaa |
86 |
Q |
| |
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|||||||| |||| || ||||||| |||||||||||||||||||||| |||||||| |
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|
| T |
11992680 |
tgttctagcaatcttgagtgagttagaatggtttattggaatgattagatcgatcaa |
11992624 |
T |
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