View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20821_low_6 (Length: 617)
Name: NF20821_low_6
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 598
Target Start/End: Original strand, 3151262 - 3151858
Alignment:
| Q |
1 |
tcacaggcatgcaaagaaatgctgctgcagccaagaaaactccacggaattttatttccagcagatgaaactgaacattgatgatacaccaatggagtac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||| |||||||| |||||| |
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| T |
3151262 |
tcacaggcatgcaaagaaatgctgctgcagccaagaaa-ctccacggaaatttatttccagcagatgaaactaaacattgatgacacaccaattgagtac |
3151360 |
T |
|
| Q |
101 |
ttcttctgtagtgattgggagtgtactagaagagaaagtgagaatcttttgagcactatgaggaatcaaaaatgctattgtggtggaatactggacaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||| || |||||||||||| |
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| T |
3151361 |
ttcttctgtagtgattgggagtgtactagaagagaaagtgggagtcttttgagcactatgaggaatcaaaaatgttattgtggtagagtactggacaaag |
3151460 |
T |
|
| Q |
201 |
atgtagctccagaacatttgagtttaggaaatggctttgttgaagaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggc |
300 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3151461 |
atgtggctccagaacatctgagtttaggaaatggctttgttgaagaaactgctacttttatcatttccgacgatctttttgtgatgcctaatgttttggc |
3151560 |
T |
|
| Q |
301 |
aacagttgtacatctacatcagaagcttggaattgataccaatgatactattgtcgaacaaactgtggaaataagcaagaaagaggtatgtttttctatc |
400 |
Q |
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| T |
3151561 |
aacagttgtacatctacatcagaagcttggaattgataccaatgacactattgtcgaacaaactgtggaaataagcaagaaagaggtatgtttttctatc |
3151660 |
T |
|
| Q |
401 |
ttctatataatctgtgattttgnnnnnnnnccttgtcatttgatgtttcatctcttgcttttgtaggtagttgatcttctcaaattatcattgttctcaa |
500 |
Q |
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| T |
3151661 |
ttctatataatctgtgattttgttttttttccttgtcatttgatgtttcatctcttgcttttgtaggtagttgatcttctcaaattatcattgttctcaa |
3151760 |
T |
|
| Q |
501 |
actcccctttgacagatttaatcttaaagaagaatcaatttgttgataaattttaccaaagcaatcaaaaaatttgaatttggaaatggagagaaacc |
598 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3151761 |
actcccctttgacagatttaatcttaaagaagaatcaatttgttgataaattttaccaaagcaatcaaaaaatttgaatttggaaatggagagaaacc |
3151858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 327
Target Start/End: Original strand, 21194706 - 21194788
Alignment:
| Q |
245 |
gaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggcaacagttgtacatctacatcagaagct |
327 |
Q |
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| T |
21194706 |
gaaactgctgcatttattatttccgacgatctttgtgtgatgcctaatgattttggaacagttatacaactacttcaaaagct |
21194788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 327
Target Start/End: Original strand, 21199931 - 21200041
Alignment:
| Q |
217 |
tttgagtttaggaaatggctttgttgaagaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggcaacagttgtacatcta |
316 |
Q |
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|||||| ||||||| || |||||| | ||||||||| | ||||| ||||| ||||||| || |||||||||||||||||| | |||||| |||| ||| |
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| T |
21199931 |
tttgagcttaggaagcggttttgttaaggaaactgctgcatttattatttcagacgatctttatgtgatgcctaatgtttttgggacagttatacaacta |
21200030 |
T |
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| Q |
317 |
catcagaagct |
327 |
Q |
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| T |
21200031 |
cttcacaagct |
21200041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 329
Target Start/End: Original strand, 24284442 - 24284554
Alignment:
| Q |
217 |
tttgagtttaggaaatggctttgttgaagaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggcaacagttgtacatcta |
316 |
Q |
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||||||| ||||||||||||||| | | ||||| || || ||||| ||||| || |||| | |||||||||||||||||| | ||||||| ||| ||| |
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| T |
24284442 |
tttgagtctaggaaatggctttgctaaggaaaccgccacatttataatttctgatgatcttactgtgatgcctaatgtttttggaacagttataccacta |
24284541 |
T |
|
| Q |
317 |
catcagaagcttg |
329 |
Q |
| |
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| ||| ||||||| |
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| T |
24284542 |
cttcaaaagcttg |
24284554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 464 - 519
Target Start/End: Complemental strand, 24232036 - 24231981
Alignment:
| Q |
464 |
taggtagttgatcttctcaaattatcattgttctcaaactcccctttgacagattt |
519 |
Q |
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| T |
24232036 |
taggtagttgatcttctcaagttatcattaatctcaaagacccctttgaccgattt |
24231981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 245 - 395
Target Start/End: Complemental strand, 24232270 - 24232120
Alignment:
| Q |
245 |
gaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggcaacagttgtacatctacatcagaagcttggaattgataccaatg |
344 |
Q |
| |
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|||| |||||||||||||||||| || |||| || ||| |||||||||||||| | | || | || |||||| ||| ||||||||| | || || | || |
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| T |
24232270 |
gaaaatgctacttttatcatttctgatgatctttgtgttatgcctaatgtttttggagcaagtttaaatctacttcaaaagcttggagtcgagactattg |
24232171 |
T |
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| Q |
345 |
atactattgtcgaacaaactgtggaaataagcaagaaagaggtatgttttt |
395 |
Q |
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|| |||||| |||||| |||| || || | ||||||||||| ||| |||| |
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| T |
24232170 |
atgctattgaggaacaagctgttgacatcaacaagaaagaggcatgctttt |
24232120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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