View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20821_low_61 (Length: 250)
Name: NF20821_low_61
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_low_61 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 92 - 250
Target Start/End: Complemental strand, 2939711 - 2939552
Alignment:
| Q |
92 |
caccgcttgaatttaaccaagaaaaa-tgacagtagtaacttccttaaattgtgcctcaaattaaaactaacttccatacataactcatttttgaggcat |
190 |
Q |
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| T |
2939711 |
caccgcttgaatttaaccaagaaaaaatgacagtagtaacttccttaaattgtgcctcaaattaaaactaacttccatacataactcatttttgaggcat |
2939612 |
T |
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| Q |
191 |
cgattattaaatggcaacaaatcacaaaaaacagcagcattagagggactgaattacaga |
250 |
Q |
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| T |
2939611 |
cgattattaaatggcaacaaatcacaaaaaacagcagcattagagggactgaattacaga |
2939552 |
T |
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