View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20821_low_63 (Length: 249)
Name: NF20821_low_63
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_low_63 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 42355466 - 42355224
Alignment:
| Q |
7 |
ccaagaaaataccgtccgattctgcgaaaaaagtccacagttgaactcagaacctgccgaaatcgattgaatctgtccatcaaacacatagttctttgtc |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42355466 |
ccaacaaaataccgtccgattctgcgaaaaaagtccacagttgaactcagaacctgccgaaatcgattgaatctgtccatcaaacacatagttctttgtc |
42355367 |
T |
|
| Q |
107 |
atattgtatccccaacaatcaacaaaagaaaagttcctgtgtcttcctgtcaaaggtttcctcaatccacaaacatgataatcgccggcactgatttcta |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42355366 |
atattgtatccccaacaatcaacaaaagaaaagttcctgtgtcttcctgtcaatggtttcctcaatccacaaacatgataatcgccggcactgatttcta |
42355267 |
T |
|
| Q |
207 |
agtactgagcatccttaaacataggttgtggcacacccatttc |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42355266 |
agtactgagcatccttaaacataggttgtggcacacccatttc |
42355224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 249
Target Start/End: Original strand, 25374260 - 25374350
Alignment:
| Q |
159 |
aaggtttcctcaatccacaaacatgataatcgccggcactgatttctaagtactgagcatccttaaacataggttgtggcacacccatttc |
249 |
Q |
| |
|
||||||| |||| |||||| ||||| ||||| |||||||| ||||||| |||| |||| || |||| ||||||||| |||||||||||||| |
|
|
| T |
25374260 |
aaggttttctcactccacatacatggtaatccccggcactaatttctaggtaccgagcttctttaatcataggttgaggcacacccatttc |
25374350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 137
Target Start/End: Original strand, 25374150 - 25374247
Alignment:
| Q |
40 |
tccacagttgaactcagaacctgccgaaatcgattgaatctgtccatcaaacacatagttctttgtcatattgtatccccaacaatcaacaaaagaaa |
137 |
Q |
| |
|
||||||||| || |||||||| || |||||||| |||| | |||||||||||| || | || ||||| || || |||||||||||||| ||||||| |
|
|
| T |
25374150 |
tccacagttaaattcagaaccggctgaaatcgaatgaaccattccatcaaacacgtaacttttggtcatgttatagccccaacaatcaactaaagaaa |
25374247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University