View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20821_low_69 (Length: 239)
Name: NF20821_low_69
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_low_69 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 2358467 - 2358697
Alignment:
| Q |
9 |
ccttatgtgacttaactcacgtatgtatataacccaacgtaatttaagtcattttaaaatacaaccaatataacttaaatcatgtttcgaataccgtgag |
108 |
Q |
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| T |
2358467 |
ccttacgtgacttaactcacgtatgtgtataacccaacgtgacttaagtcatattgaaatacaaccaatataacttaaattatgtttcgaataccgtgag |
2358566 |
T |
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| Q |
109 |
ttaactcatgttggtaacaaacatgcnnnnnnntttctttgcatatcaatataacatggtatagtatagagagagtataattaaatctagaaacaattga |
208 |
Q |
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|||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
2358567 |
ttaacttatgtcggtaacaaacatgcaaaaaaatttctttgcatatcaatataacatggtatagtatagagagagtgcaattaaatctggaaacaattga |
2358666 |
T |
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| Q |
209 |
gcaccttgacacatttaaattggaaattttt |
239 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2358667 |
gcaccttgacacatttaaattggaaattttt |
2358697 |
T |
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