View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20821_low_71 (Length: 238)
Name: NF20821_low_71
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_low_71 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 41232924 - 41232704
Alignment:
| Q |
18 |
attgtggtattttacacctcacctgattaatcaattagtcatcaccatttatagttagtaaattaactattattaatggaaattaatatatagttttttc |
117 |
Q |
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| T |
41232924 |
attgtggtattttacacctcacctgattaatcaattagtcatcaccatttatagttagtaaattaactattattaatggaaattaatatatagttttttc |
41232825 |
T |
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| Q |
118 |
ttatgtaaataaatattttgttacaattatggttgaaaactacctgatagcaagcaccgcagccagtgccattcttccatagcttagacacgccagcaac |
217 |
Q |
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| T |
41232824 |
ttatgtaaataaatattttgttacaattatggttgaaaactacctgatagcatgcaccgcagccagtgccattcttccatagcttagacacaccagcaac |
41232725 |
T |
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| Q |
218 |
attgccatcattcactgtcct |
238 |
Q |
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| T |
41232724 |
attgccatcattcactgtcct |
41232704 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 4264193 - 4264267
Alignment:
| Q |
162 |
tgatagcaagcaccgcagccagtgccattcttccatagcttagacacgccagcaacattgccatcattcactgtc |
236 |
Q |
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| T |
4264193 |
tgatagcatgcaccacaaccagatccattcttccatagccaagacacgcctgcgacattgccatcatttactgtc |
4264267 |
T |
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