View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20821_low_77 (Length: 207)

Name: NF20821_low_77
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20821_low_77
NF20821_low_77
[»] chr7 (4 HSPs)
chr7 (9-189)||(31048171-31048351)
chr7 (137-189)||(41317601-41317653)
chr7 (134-190)||(31105557-31105613)
chr7 (137-189)||(48491528-48491580)
[»] chr3 (3 HSPs)
chr3 (20-137)||(4055820-4055939)
chr3 (36-78)||(4075543-4075585)
chr3 (137-189)||(40735332-40735384)
[»] chr5 (2 HSPs)
chr5 (19-81)||(2149212-2149274)
chr5 (137-189)||(42426402-42426454)
[»] chr2 (3 HSPs)
chr2 (19-80)||(19399840-19399900)
chr2 (48-79)||(36058870-36058901)
chr2 (137-189)||(11151758-11151810)
[»] chr4 (4 HSPs)
chr4 (137-189)||(45687350-45687402)
chr4 (137-189)||(6542348-6542400)
chr4 (137-189)||(31474099-31474151)
chr4 (137-189)||(36463556-36463608)
[»] chr1 (4 HSPs)
chr1 (20-137)||(13938130-13938249)
chr1 (47-137)||(9109503-9109595)
chr1 (134-190)||(8550951-8551007)
chr1 (20-88)||(32471505-32471572)


Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 31048351 - 31048171
Alignment:
Q  9 gagcagcacagatccacaatcaattaatttcttgcaaggagatacaaaagaggttacaagaaattaacttcaagagttcttcaagtacaacttaatttgt 108  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31048351 gagcagctcagatccacaatcaatgaatttcttgcaaggagatacaaaagaggttacaagaaattaacttcaagagttctccaagtacaacttaatttgt 31048252  T
Q  109 accattttcctatctctttccatgaacaaatgaacaagagactcaaaaaatttcactcttccaaagtgtttacaatgtttc 189  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31048251 actattttcctatctctttccatgaacaaatgaacaagagactcaaaaaatttcactcttccaaaatgtttacaatgtttc 31048171  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 41317601 - 41317653
Alignment:
Q  137 aatgaacaagagactcaaaaaatttcactcttccaaagtgtttacaatgtttc 189  Q
    ||||||||||||||||||  | |||||||| ||||| ||||||||||||||||    
T  41317601 aatgaacaagagactcaatgattttcactcatccaaggtgtttacaatgtttc 41317653  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 31105557 - 31105613
Alignment:
Q  134 acaaatgaacaagagactcaaaaaatttcactcttccaaagtgtttacaatgtttct 190  Q
    |||||||||||||| ||||||  | ||||||||  |||| |||||||||||||||||    
T  31105557 acaaatgaacaagacactcaatgattttcactcacccaaggtgtttacaatgtttct 31105613  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 48491580 - 48491528
Alignment:
Q  137 aatgaacaagagactcaaaaaatttcactcttccaaagtgtttacaatgtttc 189  Q
    ||||||||||| ||||||  | ||||||||  |||||||||||||||||||||    
T  48491580 aatgaacaagacactcaatgattttcactcacccaaagtgtttacaatgtttc 48491528  T

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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 4055820 - 4055939
Alignment:
Q  20 atccacaatcaattaatttcttgcaaggagatacaaaagaggttacaagaaattaac-ttcaagagttcttcaagtacaacttaatttgta-ccattttc 117  Q
    |||||| |||||| | |||||| ||| |||||||||||||||||||||||||||||| || |  |||||| |||| ||||| |||||| || |||||| |    
T  4055820 atccactatcaatgagtttcttacaaagagatacaaaagaggttacaagaaattaacttttacaagttctccaagaacaacctaatttctacccatttcc 4055919  T
Q  118 ctatctctttccatgaacaa 137  Q
    | ||||||| ||||||||||    
T  4055920 caatctcttcccatgaacaa 4055939  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 4075543 - 4075585
Alignment:
Q  36 tttcttgcaaggagatacaaaagaggttacaagaaattaactt 78  Q
    |||||| ||| | ||||||||||||||||||||||||||||||    
T  4075543 tttcttacaaagtgatacaaaagaggttacaagaaattaactt 4075585  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 40735384 - 40735332
Alignment:
Q  137 aatgaacaagagactcaaaaaatttcactcttccaaagtgtttacaatgtttc 189  Q
    ||||||||||| ||||||  | ||||||| |||||| ||||||||||||||||    
T  40735384 aatgaacaagacactcaatgattttcacttttccaaggtgtttacaatgtttc 40735332  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 2149212 - 2149274
Alignment:
Q  19 gatccacaatcaattaatttcttgcaaggagatacaaaagaggttacaagaaattaacttcaa 81  Q
    ||||||| |||||| |||||||| |||  ||||| ||||||||||||||||||||||||||||    
T  2149212 gatccactatcaataaatttcttacaaaaagatataaaagaggttacaagaaattaacttcaa 2149274  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 42426402 - 42426454
Alignment:
Q  137 aatgaacaagagactcaaaaaatttcactcttccaaagtgtttacaatgtttc 189  Q
    ||||||||||| |||||| || ||||||||  |||| ||||||||||||||||    
T  42426402 aatgaacaagacactcaataattttcactcacccaaggtgtttacaatgtttc 42426454  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 19399900 - 19399840
Alignment:
Q  19 gatccacaatcaattaatttcttgcaaggagatacaaaagaggttacaagaaattaacttca 80  Q
    ||||||| ||||||||||||||||||| |||||||| ||||  ||| |||||||||||||||    
T  19399900 gatccactatcaattaatttcttgcaaagagatacataaga-attataagaaattaacttca 19399840  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 79
Target Start/End: Complemental strand, 36058901 - 36058870
Alignment:
Q  48 agatacaaaagaggttacaagaaattaacttc 79  Q
    ||||||||||||||||||||||||||||||||    
T  36058901 agatacaaaagaggttacaagaaattaacttc 36058870  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 11151758 - 11151810
Alignment:
Q  137 aatgaacaagagactcaaaaaatttcactcttccaaagtgtttacaatgtttc 189  Q
    ||||||||||||||||||  | ||||||||  |||| ||||||||||||||||    
T  11151758 aatgaacaagagactcaatgattttcactcacccaaggtgtttacaatgtttc 11151810  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 45687350 - 45687402
Alignment:
Q  137 aatgaacaagagactcaaaaaatttcactcttccaaagtgtttacaatgtttc 189  Q
    ||||||||||| | ||||||||||||||||  |||| ||||||||||||||||    
T  45687350 aatgaacaagacaatcaaaaaatttcactcacccaaggtgtttacaatgtttc 45687402  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 6542348 - 6542400
Alignment:
Q  137 aatgaacaagagactcaaaaaatttcactcttccaaagtgtttacaatgtttc 189  Q
    ||||||||||| |||||| || ||||||||  |||| ||||||||||||||||    
T  6542348 aatgaacaagacactcaataattttcactcacccaaggtgtttacaatgtttc 6542400  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 31474151 - 31474099
Alignment:
Q  137 aatgaacaagagactcaaaaaatttcactcttccaaagtgtttacaatgtttc 189  Q
    ||||||||||| ||||||  | ||||||||  |||||||||||||||||||||    
T  31474151 aatgaacaagacactcaatgattttcactcacccaaagtgtttacaatgtttc 31474099  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 36463556 - 36463608
Alignment:
Q  137 aatgaacaagagactcaaaaaatttcactcttccaaagtgtttacaatgtttc 189  Q
    ||||||||||| ||||||  ||||||||||  |||| ||||||||||||||||    
T  36463556 aatgaacaagacactcaatgaatttcactcacccaaggtgtttacaatgtttc 36463608  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 13938249 - 13938130
Alignment:
Q  20 atccacaatcaattaatttcttgcaaggagatacaaaagaggttacaagaaatta-acttcaagagttcttcaagtacaacttaatttgta-ccattttc 117  Q
    |||||| |||||| | |||||| ||| ||||||||||| |||||||||||||||| | || |  |||||| |||| ||||| |||||| || |||||| |    
T  13938249 atccactatcaatgagtttcttacaaagagatacaaaaaaggttacaagaaattatattttacaagttctccaagaacaacctaatttctacccatttcc 13938150  T
Q  118 ctatctctttccatgaacaa 137  Q
    | ||||||| ||| ||||||    
T  13938149 caatctcttcccacgaacaa 13938130  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 137
Target Start/End: Original strand, 9109503 - 9109595
Alignment:
Q  47 gagatacaaaagaggttacaagaaattaacttcaa-gagttcttcaagt-acaacttaatttgtaccattttc-ctatctctttccatgaacaa 137  Q
    |||||||||||| ||||||||||||||||||||||  |||||| ||||| | |||||||||| | |||||||| | ||||| | ||||||||||    
T  9109503 gagatacaaaag-ggttacaagaaattaacttcaacaagttctccaagtaaaaacttaatttcttccattttctcaatctcctaccatgaacaa 9109595  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 8550951 - 8551007
Alignment:
Q  134 acaaatgaacaagagactcaaaaaatttcactcttccaaagtgtttacaatgtttct 190  Q
    |||||||||||||| ||||||  | ||||||||  |||| |||||||||||||||||    
T  8550951 acaaatgaacaagacactcaatgattttcactcacccaatgtgtttacaatgtttct 8551007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 32471572 - 32471505
Alignment:
Q  20 atccacaatcaattaatttcttgcaaggagatacaaaagaggttacaagaaattaacttcaagagttct 88  Q
    |||||| |||||| | |||||| ||| ||||||||||||| ||| ||| ||||||||||||| ||||||    
T  32471572 atccactatcaatgagtttcttacaaagagatacaaaaga-gttgcaataaattaacttcaacagttct 32471505  T

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