View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20821_low_8 (Length: 569)

Name: NF20821_low_8
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20821_low_8
NF20821_low_8
[»] chr4 (8 HSPs)
chr4 (31-368)||(3670517-3670854)
chr4 (372-553)||(3670297-3670481)
chr4 (99-130)||(49211849-49211880)
chr4 (93-127)||(55157627-55157661)
chr4 (98-127)||(3673427-3673456)
chr4 (99-127)||(8179912-8179940)
chr4 (99-127)||(24972272-24972300)
chr4 (99-127)||(48007294-48007322)
[»] chr8 (2 HSPs)
chr8 (42-100)||(9891982-9892040)
chr8 (99-127)||(8051935-8051963)
[»] chr7 (4 HSPs)
chr7 (99-130)||(4125478-4125509)
chr7 (99-130)||(24507866-24507897)
chr7 (99-127)||(4125745-4125773)
chr7 (99-127)||(13298777-13298805)
[»] chr5 (3 HSPs)
chr5 (99-130)||(7725536-7725567)
chr5 (99-127)||(8383971-8383999)
chr5 (99-127)||(38378220-38378248)
[»] scaffold0276 (1 HSPs)
scaffold0276 (99-129)||(2109-2139)
[»] chr6 (1 HSPs)
chr6 (99-127)||(17945301-17945329)
[»] chr3 (1 HSPs)
chr3 (99-127)||(22200607-22200635)
[»] chr2 (1 HSPs)
chr2 (99-127)||(18176881-18176909)
[»] chr1 (8 HSPs)
chr1 (99-127)||(10544172-10544200)
chr1 (99-127)||(17414743-17414771)
chr1 (99-127)||(17415358-17415386)
chr1 (99-127)||(18459589-18459617)
chr1 (99-127)||(18459751-18459779)
chr1 (99-127)||(33024673-33024701)
chr1 (99-127)||(49915876-49915904)
chr1 (99-127)||(52053867-52053895)


Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 31 - 368
Target Start/End: Complemental strand, 3670854 - 3670517
Alignment:
Q  31 aataaaatacattttgttatttaaatgaaaactattattacacgaaagttaattagaaaataaacaaattatacaatgaatattttatattctaatagtt 130  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||| ||||||| ||||| |||||||||||||||||||||    
T  3670854 aataaaatacattttgttatttaaatgaaaactaatattacacaaaagttaattaggaaataaataaattatgcaatggatattttatattctaatagtt 3670755  T
Q  131 aaattagtagatgtctataacaatttcttagactagaattcctataatatacacaaaagcatgcatgataagtggaaaatagatcctctagagtcatcaa 230  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3670754 aaattagtagatgtctataacaacttcttagactagaattcctataatatacacaaaagcatgcatgataagtggaaaatagatcctctagagtcatcaa 3670655  T
Q  231 atcggtgtaacaagatctcgaccgttggattgagttgcacctcaaatccaatggttcaaaattttatgcaccgaccggaggactacaaaggatccaagct 330  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| ||||||||||||    
T  3670654 atcggtgtagcaagatctcgaccgttggattgagttgcacctcaaatccaatggttcgaaattttatgcaccaactggaggactacagaggatccaagct 3670555  T
Q  331 aacgagtaacgttctaattccaaattaaatgttcttca 368  Q
     |||||||||||||||||||||||||||||||||||||    
T  3670554 gacgagtaacgttctaattccaaattaaatgttcttca 3670517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 372 - 553
Target Start/End: Complemental strand, 3670481 - 3670297
Alignment:
Q  372 gcgtattgttcagaattggtatttgaaccaattgatctgtccaaaaagcttttagaattcatca---tgtccagctgaaaatgttcttgattttcagaag 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   |||||||||||||||||||||||||||||||||    
T  3670481 gcgtattgttcagaattggtatttgaaccaattgatctgtccaaaaagcttctagaattcatcaacatgtccagctgaaaatgttcttgattttcagaag 3670382  T
Q  469 ttggtagctttgaatcatgaagtgaatttgtaaaatttgctaagctagaataattagtcactgctgaaggccttataggtgtaac 553  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3670381 ttggtagctttgaatcatgaagtgaatttgtaaaatttgctaagctagaataattagtcactgctgaaggccttataggtgtaac 3670297  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 130
Target Start/End: Original strand, 49211849 - 49211880
Alignment:
Q  99 ttatacaatgaatattttatattctaatagtt 130  Q
    ||||||||||||||||||||||||||||||||    
T  49211849 ttatacaatgaatattttatattctaatagtt 49211880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 127
Target Start/End: Complemental strand, 55157661 - 55157627
Alignment:
Q  93 aacaaattatacaatgaatattttatattctaata 127  Q
    ||||| |||||||||||||||||||||||||||||    
T  55157661 aacaatttatacaatgaatattttatattctaata 55157627  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 127
Target Start/End: Original strand, 3673427 - 3673456
Alignment:
Q  98 attatacaatgaatattttatattctaata 127  Q
    ||||||||||||||||||||||||||||||    
T  3673427 attatacaatgaatattttatattctaata 3673456  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 8179912 - 8179940
Alignment:
Q  99 ttatacaatgaatattttatattctaata 127  Q
    |||||||||||||||||||||||||||||    
T  8179912 ttatacaatgaatattttatattctaata 8179940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 24972272 - 24972300
Alignment:
Q  99 ttatacaatgaatattttatattctaata 127  Q
    |||||||||||||||||||||||||||||    
T  24972272 ttatacaatgaatattttatattctaata 24972300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 48007294 - 48007322
Alignment:
Q  99 ttatacaatgaatattttatattctaata 127  Q
    |||||||||||||||||||||||||||||    
T  48007294 ttatacaatgaatattttatattctaata 48007322  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 9892040 - 9891982
Alignment:
Q  42 ttttgttatttaaatgaaaactattattacacgaaagttaattagaaaataaacaaatt 100  Q
    ||||||||||||||||||||||| |||||||| |||||||||||| ||||||| |||||    
T  9892040 ttttgttatttaaatgaaaactaatattacacaaaagttaattaggaaataaataaatt 9891982  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 8051935 - 8051963
Alignment:
Q  99 ttatacaatgaatattttatattctaata 127  Q
    |||||||||||||||||||||||||||||    
T  8051935 ttatacaatgaatattttatattctaata 8051963  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 130
Target Start/End: Complemental strand, 4125509 - 4125478
Alignment:
Q  99 ttatacaatgaatattttatattctaatagtt 130  Q
    ||||||||||||||||||||||||||||||||    
T  4125509 ttatacaatgaatattttatattctaatagtt 4125478  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 130
Target Start/End: Original strand, 24507866 - 24507897
Alignment:
Q  99 ttatacaatgaatattttatattctaatagtt 130  Q
    ||||||||||||||||||||||||||||||||    
T  24507866 ttatacaatgaatattttatattctaatagtt 24507897  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 4125745 - 4125773
Alignment:
Q  99 ttatacaatgaatattttatattctaata 127  Q
    |||||||||||||||||||||||||||||    
T  4125745 ttatacaatgaatattttatattctaata 4125773  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 13298805 - 13298777
Alignment:
Q  99 ttatacaatgaatattttatattctaata 127  Q
    |||||||||||||||||||||||||||||    
T  13298805 ttatacaatgaatattttatattctaata 13298777  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 130
Target Start/End: Complemental strand, 7725567 - 7725536
Alignment:
Q  99 ttatacaatgaatattttatattctaatagtt 130  Q
    ||||||||||||||||||||||||||||||||    
T  7725567 ttatacaatgaatattttatattctaatagtt 7725536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 8383999 - 8383971
Alignment:
Q  99 ttatacaatgaatattttatattctaata 127  Q
    |||||||||||||||||||||||||||||    
T  8383999 ttatacaatgaatattttatattctaata 8383971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 38378248 - 38378220
Alignment:
Q  99 ttatacaatgaatattttatattctaata 127  Q
    |||||||||||||||||||||||||||||    
T  38378248 ttatacaatgaatattttatattctaata 38378220  T

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Target: scaffold0276 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 129
Target Start/End: Original strand, 2109 - 2139
Alignment:
Q  99 ttatacaatgaatattttatattctaatagt 129  Q
    |||||||||||||||||||||||||||||||    
T  2109 ttatacaatgaatattttatattctaatagt 2139  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 17945301 - 17945329
Alignment:
Q  99 ttatacaatgaatattttatattctaata 127  Q
    |||||||||||||||||||||||||||||    
T  17945301 ttatacaatgaatattttatattctaata 17945329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 22200635 - 22200607
Alignment:
Q  99 ttatacaatgaatattttatattctaata 127  Q
    |||||||||||||||||||||||||||||    
T  22200635 ttatacaatgaatattttatattctaata 22200607  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 18176881 - 18176909
Alignment:
Q  99 ttatacaatgaatattttatattctaata 127  Q
    |||||||||||||||||||||||||||||    
T  18176881 ttatacaatgaatattttatattctaata 18176909  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 10544172 - 10544200
Alignment:
Q  99 ttatacaatgaatattttatattctaata 127  Q
    |||||||||||||||||||||||||||||    
T  10544172 ttatacaatgaatattttatattctaata 10544200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 17414771 - 17414743
Alignment:
Q  99 ttatacaatgaatattttatattctaata 127  Q
    |||||||||||||||||||||||||||||    
T  17414771 ttatacaatgaatattttatattctaata 17414743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 17415358 - 17415386
Alignment:
Q  99 ttatacaatgaatattttatattctaata 127  Q
    |||||||||||||||||||||||||||||    
T  17415358 ttatacaatgaatattttatattctaata 17415386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 18459589 - 18459617
Alignment:
Q  99 ttatacaatgaatattttatattctaata 127  Q
    |||||||||||||||||||||||||||||    
T  18459589 ttatacaatgaatattttatattctaata 18459617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 18459751 - 18459779
Alignment:
Q  99 ttatacaatgaatattttatattctaata 127  Q
    |||||||||||||||||||||||||||||    
T  18459751 ttatacaatgaatattttatattctaata 18459779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 33024701 - 33024673
Alignment:
Q  99 ttatacaatgaatattttatattctaata 127  Q
    |||||||||||||||||||||||||||||    
T  33024701 ttatacaatgaatattttatattctaata 33024673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 49915904 - 49915876
Alignment:
Q  99 ttatacaatgaatattttatattctaata 127  Q
    |||||||||||||||||||||||||||||    
T  49915904 ttatacaatgaatattttatattctaata 49915876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 52053867 - 52053895
Alignment:
Q  99 ttatacaatgaatattttatattctaata 127  Q
    |||||||||||||||||||||||||||||    
T  52053867 ttatacaatgaatattttatattctaata 52053895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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