View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20821_low_9 (Length: 564)
Name: NF20821_low_9
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 17 - 553
Target Start/End: Original strand, 42354663 - 42355200
Alignment:
| Q |
17 |
aaaacttgtgagaaaaaccatatctttgtggatgaagttttttagtctttttctgaactctttaaacaacaatatttgtcatgtttcttgctgagtaatc |
116 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42354663 |
aaaacttgtgaaaaaaaccatatctttgtggatgaagttttttagtctttttctgaactctttaaacaacaatatttgtcatgtttcttgctgagttatc |
42354762 |
T |
|
| Q |
117 |
aataggtatattttattcatcaaatgaaaggtggaagtcaacaagagtatgtgatgtctcaagtccaaccaacattattagtaaaaattcaacctttttg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42354763 |
aataggtatattttattcatcaaatgaaaggtggaagtcaacaagagtatgtgatgtctcaagtccaaccaacattattagtaaaaattcaacctttttg |
42354862 |
T |
|
| Q |
217 |
gttataaaataa-gtttttgagtctctaggtatcatggggttctcaagaaaacaattctcaacctaccttttgaatactattttatttgaggttgttgtt |
315 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42354863 |
gttataaaataaagtttttgagtctctaggtatcatggggttctcaagaaaacaattctcaacctaccttttgaatactattttatttgaggttgttgtt |
42354962 |
T |
|
| Q |
316 |
ttttcatggttatggtcaaaagtaactggtcttggttccatgtcatcaattgctgtttcttatggagataaaggttctgctttctgtggcttgaaatcag |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42354963 |
ttttcatggttatggtcaaaagtaactggtcttggttccatgtcatcaattgctgtttcttatggagataaaggttctgctttctgtggcttgaaatcag |
42355062 |
T |
|
| Q |
416 |
atggatctcacactgtgacatgttatggaatgaactcagccatagtttatggaacaccatctcagtttccattccttggtctaacttctggtgatggttt |
515 |
Q |
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| T |
42355063 |
atggatctcacactgtgacatgttatggaatgaactcagccatagtttatggaacaccatctcagtttccattccttggtctaacttctggtgatggttt |
42355162 |
T |
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| Q |
516 |
tgtttgtggacttttaatgagttcaaaccaaccatatt |
553 |
Q |
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| T |
42355163 |
tgtttgtggacttttaatgagttcaaatcaaccatatt |
42355200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 344 - 553
Target Start/End: Complemental strand, 25374583 - 25374374
Alignment:
| Q |
344 |
gtcttggttccatgtcatcaattgctgtttcttatggagataaaggttctgctttctgtggcttgaaatcagatggatctcacactgtgacatgttatgg |
443 |
Q |
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||||||||||||||||||| ||||| | || ||||| || ||||| || | ||| ||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
25374583 |
gtcttggttccatgtcatccattgcaatctcatatggtgaaaaaggctcagttttttgtggtttgaaatcagatggatctcatactgtgacatgttatgg |
25374484 |
T |
|
| Q |
444 |
aatgaactcagccatagtttatggaacaccatctcagtttccattccttggtctaacttctggtgatggttttgtttgtggacttttaatgagttcaaac |
543 |
Q |
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| T |
25374483 |
atccaactcagctataatctatgaaacaccaacccatttctcatttcatggcctaaccgctggtgatggatttgtttgtggtcttctaatggattcaaat |
25374384 |
T |
|
| Q |
544 |
caaccatatt |
553 |
Q |
| |
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||||| |||| |
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| T |
25374383 |
caaccttatt |
25374374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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