View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20822_high_12 (Length: 340)
Name: NF20822_high_12
Description: NF20822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20822_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 27 - 323
Target Start/End: Complemental strand, 41288753 - 41288458
Alignment:
| Q |
27 |
ttaccttcattttcttttcttaaattattaccggtgtccgtgtgacagcttcatatagacatgaaacaaaacatactctctactataagtacttagaatg |
126 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41288753 |
ttactttcattttcttttcttaaattattaccggtgtccgtgtgacagcttcatgtagacatgaaacaaaacatactctctactataggtacttagaatg |
41288654 |
T |
|
| Q |
127 |
caatgtaggtgatggaagatttacctgtttgagtcaagtaaaacggcaaccaataaagaaaagtataagcaacaagcttagcaaagaaaagacacaaagc |
226 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41288653 |
caatgtaggtgatggaagatt-acctgtttgagtcaagtaaaacggcaaccaataaagaaaagtataagcaacaagcttagcaaagaaaagacacaaagc |
41288555 |
T |
|
| Q |
227 |
aaaagtaataacccctggtatcatacaagcttcaagtaacccaatactcttccctctcccatccccaccatttccacttccactctttctctctcct |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| |
|
|
| T |
41288554 |
aaaagtaataacccctggtatcatacaagcttcaagtaacccaatactcttccctctcccatcaccaccctttccacttccactctccctctctcct |
41288458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University