View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20822_high_2 (Length: 654)

Name: NF20822_high_2
Description: NF20822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20822_high_2
NF20822_high_2
[»] chr7 (5 HSPs)
chr7 (171-388)||(41204097-41204314)
chr7 (415-515)||(21820129-21820228)
chr7 (74-143)||(41204344-41204413)
chr7 (426-495)||(7841298-7841367)
chr7 (415-490)||(16262661-16262736)
[»] chr8 (3 HSPs)
chr8 (415-568)||(44663585-44663737)
chr8 (415-514)||(35348991-35349090)
chr8 (432-510)||(19962047-19962124)
[»] chr6 (3 HSPs)
chr6 (415-568)||(31444771-31444923)
chr6 (415-510)||(33054123-33054217)
chr6 (415-449)||(27444127-27444161)
[»] chr2 (8 HSPs)
chr2 (415-568)||(4453778-4453930)
chr2 (13-143)||(26811995-26812124)
chr2 (171-220)||(26811928-26811978)
chr2 (415-490)||(9208570-9208645)
chr2 (415-452)||(997820-997857)
chr2 (415-452)||(7161816-7161853)
chr2 (416-452)||(3625182-3625218)
chr2 (332-388)||(26811770-26811829)
[»] chr5 (2 HSPs)
chr5 (13-143)||(32505134-32505265)
chr5 (171-220)||(32505065-32505115)
[»] chr4 (5 HSPs)
chr4 (415-495)||(32651244-32651324)
chr4 (415-495)||(41810171-41810251)
chr4 (415-514)||(38467666-38467765)
chr4 (417-510)||(3649873-3649965)
chr4 (414-449)||(26720236-26720271)
[»] chr3 (5 HSPs)
chr3 (416-495)||(52130790-52130869)
chr3 (415-490)||(46233942-46234017)
chr3 (415-490)||(11394018-11394093)
chr3 (415-495)||(19766014-19766093)
chr3 (426-512)||(31687881-31687966)
[»] chr1 (7 HSPs)
chr1 (422-495)||(17726039-17726112)
chr1 (415-484)||(22368184-22368253)
chr1 (422-495)||(14184692-14184765)
chr1 (415-490)||(32440628-32440703)
chr1 (415-491)||(1721556-1721632)
chr1 (415-449)||(31771394-31771428)
chr1 (415-449)||(7608406-7608440)
[»] scaffold0152 (1 HSPs)
scaffold0152 (410-512)||(10190-10291)
[»] scaffold0003 (2 HSPs)
scaffold0003 (415-512)||(36966-37062)
scaffold0003 (415-449)||(43200-43234)
[»] scaffold0014 (1 HSPs)
scaffold0014 (415-449)||(32615-32649)


Alignment Details
Target: chr7 (Bit Score: 111; Significance: 1e-55; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 171 - 388
Target Start/End: Complemental strand, 41204314 - 41204097
Alignment:
Q  171 cttaatttaacttcatttcatgtagttttgttccat-atgtatagttgtgaattgtgattatattgggcagaagaacctaataannnnnnnnaagggaaa 269  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||        ||||||||    
T  41204314 cttaatttaacttcatttcatgtagttttgttccatcatgtatagttgtgaattgtgattatattggacagaagaacctaataattttttttaagggaaa 41204215  T
Q  270 aacctaatcatgtatagtaccttttttatatgggnnnnnnnggatggnnnnnnnnnncttagaaccatatatgggaaagtggtagaaagtttaggccaca 369  Q
    ||||||||||||||||||| ||||||||||||||       ||| ||          | |||||||||||||| ||||||||||||||||||||||||||    
T  41204214 aacctaatcatgtatagtagcttttttatatggg-ttttttggaaggaaaaaaaaaacgtagaaccatatatgagaaagtggtagaaagtttaggccaca 41204116  T
Q  370 aggcattacattcaaatat 388  Q
    |||||||||||||||||||    
T  41204115 aggcattacattcaaatat 41204097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 415 - 515
Target Start/End: Complemental strand, 21820228 - 21820129
Alignment:
Q  415 atctaacttattcctaatcctagttaacactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaatattagcccttggatctaac 514  Q
    |||||||||||||||||||||| |||||||||||||||  ||| |||||| ||||||| | |||||||||||||||||| |||||||| |||||||||||    
T  21820228 atctaacttattcctaatcctaattaacactccaattaacacttaaaaccataattct-acatttttaggcgccaatcagtattagccattggatctaac 21820130  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 41204413 - 41204344
Alignment:
Q  74 ttataatattaatccggtgttttttcattcatttctttactcattggtgtaccattgttattcctactat 143  Q
    |||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  41204413 ttataatattgatccggtgttttttcattcatttctttactcaatgttgtaccattgttattcctactat 41204344  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 426 - 495
Target Start/End: Original strand, 7841298 - 7841367
Alignment:
Q  426 tcctaatcctagttaacactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaat 495  Q
    ||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||| | ||||||||    
T  7841298 tcctaatcctagttaacactctaattaccacttaaaaccctaattctaagatttttaggtgtcaatcaat 7841367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 415 - 490
Target Start/End: Complemental strand, 16262736 - 16262661
Alignment:
Q  415 atctaacttattcctaatcctagttaacactccaattactact-aaaaaccctaattctaagatttttaggcgccaa 490  Q
    ||||||||||||||||||||||||||||||| ||||||  |||  ||||||||||| |||| | |||||||||||||    
T  16262736 atctaacttattcctaatcctagttaacacttcaattatcactccaaaaccctaatcctaa-agttttaggcgccaa 16262661  T

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Target: chr8 (Bit Score: 106; Significance: 1e-52; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 415 - 568
Target Start/End: Complemental strand, 44663737 - 44663585
Alignment:
Q  415 atctaacttattcctaatcctagttaacactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaatattagcccttggatctaac 514  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| || ||||||||||||||||||||||||||||||||| |||    
T  44663737 atctaacttattcctaatcctagttaacactccaattaccacttaaaaccctaattctatga-ttttaggcgccaatcaatattagcccttggatccaac 44663639  T
Q  515 cnnnnnnnngcgccattagtctatcaaccctacatctaatcttgattatgggaa 568  Q
    |        |||||||||||||||||||||||||||||||||||||||||||||    
T  44663638 cctttttttgcgccattagtctatcaaccctacatctaatcttgattatgggaa 44663585  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 415 - 514
Target Start/End: Original strand, 35348991 - 35349090
Alignment:
Q  415 atctaacttattcctaatcctagttaacactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaatattagcccttggatctaac 514  Q
    |||||||||||| |||||||||||||||||||||||||  ||| |||| ||||||||||    |||||||||||||||| ||| | || || ||||||||    
T  35348991 atctaacttatttctaatcctagttaacactccaattaacacttaaaatcctaattctacttattttaggcgccaatcagtatcaaccatttgatctaac 35349090  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 432 - 510
Target Start/End: Original strand, 19962047 - 19962124
Alignment:
Q  432 tcctagttaacactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaatattagcccttggatc 510  Q
    ||||||||||||||| |||||  ||| |||||||||||| | |  ||||||||||||||||| || ||||| |||||||    
T  19962047 tcctagttaacactcaaattaacacttaaaaccctaatt-ttacttttttaggcgccaatcagtactagccattggatc 19962124  T

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Target: chr6 (Bit Score: 106; Significance: 1e-52; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 415 - 568
Target Start/End: Original strand, 31444771 - 31444923
Alignment:
Q  415 atctaacttattcctaatcctagttaacactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaatattagcccttggatctaac 514  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | | ||||||||||||||||||||||||||||||||| |||    
T  31444771 atctaacttattcctaatcctagttaacactccaattactacttaaaaccctaattct-ataattttaggcgccaatcaatattagcccttggatccaac 31444869  T
Q  515 cnnnnnnnngcgccattagtctatcaaccctacatctaatcttgattatgggaa 568  Q
    |        |||||||||||||||||||||||||||||||||||||||||||||    
T  31444870 cctttttttgcgccattagtctatcaaccctacatctaatcttgattatgggaa 31444923  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 415 - 510
Target Start/End: Complemental strand, 33054217 - 33054123
Alignment:
Q  415 atctaacttattcctaatcctagttaacactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaatattagcccttggatc 510  Q
    |||||||||||||||||||||| |||||||| ||||||  ||| ||||||||||  || |  |||||||||||||||||||  || ||||||||||    
T  33054217 atctaacttattcctaatcctaattaacactacaattaacacttaaaaccctaaacct-acttttttaggcgccaatcaatcctaacccttggatc 33054123  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 415 - 449
Target Start/End: Original strand, 27444127 - 27444161
Alignment:
Q  415 atctaacttattcctaatcctagttaacactccaa 449  Q
    ||||||||||||||||||| |||||||||||||||    
T  27444127 atctaacttattcctaatcgtagttaacactccaa 27444161  T

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Target: chr2 (Bit Score: 106; Significance: 1e-52; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 415 - 568
Target Start/End: Original strand, 4453778 - 4453930
Alignment:
Q  415 atctaacttattcctaatcctagttaacactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaatattagcccttggatctaac 514  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| || |||||||||||||||||||||| ||||||||||||||    
T  4453778 atctaacttattcctaatcctagttaacactccaattaccacttaaaaccctaattctatga-ttttaggcgccaatcaatattaacccttggatctaac 4453876  T
Q  515 cnnnnnnnngcgccattagtctatcaaccctacatctaatcttgattatgggaa 568  Q
    |        |||||||||||||||||||||||||||||||||||||||||||||    
T  4453877 cctttttttgcgccattagtctatcaaccctacatctaatcttgattatgggaa 4453930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 26812124 - 26811995
Alignment:
Q  13 aatatgataagagtgtgtataattgtaccaattatatataattataaagatctattttacattataatattaatccggtgttttttcattcatttcttta 112  Q
    |||||||||| ||| |||||||||||| |||| |||| |||  ||||| ||||||||| |||||||||||| |||  |||||||| | ||||||||||||    
T  26812124 aatatgataatagtatgtataattgtatcaatcatatctaaacataaatatctattttgcattataatattgatcatgtgttttt-ctttcatttcttta 26812026  T
Q  113 ctcattggtgtaccattgttattcctactat 143  Q
    ||||||||||||||||||||| |||||||||    
T  26812025 ctcattggtgtaccattgttaatcctactat 26811995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 26811978 - 26811928
Alignment:
Q  171 cttaatttaacttcatttcatgtagttttgttccat-atgtatagttgtga 220  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26811978 cttaatttaacttcatttcatgtagttttgttccatcatgtatagttgtga 26811928  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 415 - 490
Target Start/End: Original strand, 9208570 - 9208645
Alignment:
Q  415 atctaacttattcctaatcctagttaacactccaattactact-aaaaaccctaattctaagatttttaggcgccaa 490  Q
    ||||||||||||||||||||||||||||||||||||||  |||  ||||||||||| |||| | |||||||||||||    
T  9208570 atctaacttattcctaatcctagttaacactccaattatcactccaaaaccctaatcctaa-agttttaggcgccaa 9208645  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 415 - 452
Target Start/End: Original strand, 997820 - 997857
Alignment:
Q  415 atctaacttattcctaatcctagttaacactccaatta 452  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  997820 atctaacttattcctaatcctagttaacacttcaatta 997857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 415 - 452
Target Start/End: Original strand, 7161816 - 7161853
Alignment:
Q  415 atctaacttattcctaatcctagttaacactccaatta 452  Q
    |||||||||||| |||||||||||||||||||||||||    
T  7161816 atctaacttatttctaatcctagttaacactccaatta 7161853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 416 - 452
Target Start/End: Original strand, 3625182 - 3625218
Alignment:
Q  416 tctaacttattcctaatcctagttaacactccaatta 452  Q
    ||||||||||||||||||||| |||||||||||||||    
T  3625182 tctaacttattcctaatcctaattaacactccaatta 3625218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 332 - 388
Target Start/End: Complemental strand, 26811829 - 26811770
Alignment:
Q  332 aaccatatatgggaa-agtggtagaaagttta--ggccacaaggcattacattcaaatat 388  Q
    ||||||||||||||| |||||||| |||||||  ||||||||| |||| |||||||||||    
T  26811829 aaccatatatgggaagagtggtaggaagtttaaaggccacaagacattgcattcaaatat 26811770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 32505265 - 32505134
Alignment:
Q  13 aatatgataagagtgtgtataattgtaccaattatatataattataaagatctattttacattataatattaatccggtg-ttttttcattcatttcttt 111  Q
    |||||||||||||| ||||||||||||||||| |||| |||  |||||||| |||||| |||||||||||| |||  ||| ||||||| |||||||| ||    
T  32505265 aatatgataagagtatgtataattgtaccaatcatatctaaacataaagatttattttgcattataatattgatcttgtgtttttttctttcatttcctt 32505166  T
Q  112 actcattggtgtaccattgttattcctactat 143  Q
    ||||||||||||||||||||||||||||||||    
T  32505165 actcattggtgtaccattgttattcctactat 32505134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 32505115 - 32505065
Alignment:
Q  171 cttaatttaacttcatttcatgtagttttgttccat-atgtatagttgtga 220  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||    
T  32505115 cttaatttaacttcatttcatgtagttttgttccatcatatatagttgtga 32505065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 415 - 495
Target Start/End: Complemental strand, 32651324 - 32651244
Alignment:
Q  415 atctaacttattcctaatcctagttaacactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaat 495  Q
    ||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||| ||||    
T  32651324 atctaacttattcctaatcctagttaacactccaattatcacttaaaaccctaattctaagatttttaggcgccaaacaat 32651244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 415 - 495
Target Start/End: Original strand, 41810171 - 41810251
Alignment:
Q  415 atctaacttattcctaatcctagttaacactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaat 495  Q
    |||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| ||||||||||| ||||||||||||    
T  41810171 atctaacttatttctaatcctagttaacactccaattaccacttaaaaccctaattttaagatttttaagcgccaatcaat 41810251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 415 - 514
Target Start/End: Complemental strand, 38467765 - 38467666
Alignment:
Q  415 atctaacttattcctaatcctagttaacactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaatattagcccttggatctaac 514  Q
    ||||||||||||  ||||||||||||||||||||||||  ||| |||||||||||||||    |||||||||||||||| |||||||| |||||||||||    
T  38467765 atctaacttatttataatcctagttaacactccaattaacacttaaaaccctaattctacttattttaggcgccaatcagtattagccattggatctaac 38467666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 417 - 510
Target Start/End: Original strand, 3649873 - 3649965
Alignment:
Q  417 ctaacttattcctaatcctagttaacactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaatattagcccttggatc 510  Q
    ||||||||||||||||||||||||||||||||||||  ||| |||||||||| ||| |  |||||||||||||||||||  || ||||||||||    
T  3649873 ctaacttattcctaatcctagttaacactccaattaacacttaaaaccctaaatct-acttttttaggcgccaatcaatcctaacccttggatc 3649965  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 414 - 449
Target Start/End: Original strand, 26720236 - 26720271
Alignment:
Q  414 catctaacttattcctaatcctagttaacactccaa 449  Q
    ||||||||||||||||||||||||||||||||||||    
T  26720236 catctaacttattcctaatcctagttaacactccaa 26720271  T

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Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 416 - 495
Target Start/End: Original strand, 52130790 - 52130869
Alignment:
Q  416 tctaacttattcctaatcctagttaacactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaat 495  Q
    ||||||||||| |||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  52130790 tctaacttatttctaatcctaggtaacactccaattaccacttaaaaccctaattctaagatttttaggcgccaatcaat 52130869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 415 - 490
Target Start/End: Complemental strand, 46234017 - 46233942
Alignment:
Q  415 atctaacttattcctaatcctagttaacactccaattactact-aaaaaccctaattctaagatttttaggcgccaa 490  Q
    ||||||||||||||||||||||||||||||||||||||  |||  ||||||||||| |||| | |||||||||||||    
T  46234017 atctaacttattcctaatcctagttaacactccaattatcactccaaaaccctaatcctaa-agttttaggcgccaa 46233942  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 415 - 490
Target Start/End: Original strand, 11394018 - 11394093
Alignment:
Q  415 atctaacttattcctaatcctagttaacactccaattactact-aaaaaccctaattctaagatttttaggcgccaa 490  Q
    |||||||||||| |||||||||||||||||||||||||  |||  ||||||||||| |||| | |||||||||||||    
T  11394018 atctaacttatttctaatcctagttaacactccaattatcactccaaaaccctaatcctaa-agttttaggcgccaa 11394093  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 415 - 495
Target Start/End: Original strand, 19766014 - 19766093
Alignment:
Q  415 atctaacttattcctaatcctagttaacactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaat 495  Q
    |||||||||||| |||||||||||||||||||||||||  |||  |||||||||| || |  |||||||||||||| ||||    
T  19766014 atctaacttatttctaatcctagttaacactccaattaacactccaaaccctaatcct-acttttttaggcgccaaacaat 19766093  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 512
Target Start/End: Original strand, 31687881 - 31687966
Alignment:
Q  426 tcctaatcctagttaacactccaa-ttactactaaaaaccctaattctaagatttttaggcgccaatcaatattagcccttggatcta 512  Q
    ||||| |||||||||||||||||| |||| |||  ||||||||||||||   |||||||||||||| ||||  |||||||||||||||    
T  31687881 tcctagtcctagttaacactccaacttac-actccaaaccctaattctact-tttttaggcgccaaacaatcctagcccttggatcta 31687966  T

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Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 422 - 495
Target Start/End: Original strand, 17726039 - 17726112
Alignment:
Q  422 ttattcctaatcctagttaacactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaat 495  Q
    |||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||| ||||    
T  17726039 ttattcctaatcctagttaacactccaattatcacttaaaaccctaattctaagatttttaggcgccaaacaat 17726112  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 415 - 484
Target Start/End: Complemental strand, 22368253 - 22368184
Alignment:
Q  415 atctaacttattcctaatcctagttaacactccaattactactaaaaaccctaattctaagatttttagg 484  Q
    ||||||||||||||||||||||||||||||| ||||||  ||| ||||||||||||||||||||||||||    
T  22368253 atctaacttattcctaatcctagttaacacttcaattatcacttaaaaccctaattctaagatttttagg 22368184  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 422 - 495
Target Start/End: Original strand, 14184692 - 14184765
Alignment:
Q  422 ttattcctaatcctagttaacactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaat 495  Q
    ||||| |||||  |||||||||||| |||||| ||| ||||| |||||||||||||||||||||||||||||||    
T  14184692 ttatttctaattatagttaacactctaattaccacttaaaactctaattctaagatttttaggcgccaatcaat 14184765  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 415 - 490
Target Start/End: Complemental strand, 32440703 - 32440628
Alignment:
Q  415 atctaacttattcctaatcctagttaacactccaattactact-aaaaaccctaattctaagatttttaggcgccaa 490  Q
    ||||||||||||||||||||||||||||||||||||||  |||  ||||||||||| |||| | |||||||||||||    
T  32440703 atctaacttattcctaatcctagttaacactccaattatcactccaaaaccctaatcctaa-agttttaggcgccaa 32440628  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 415 - 491
Target Start/End: Original strand, 1721556 - 1721632
Alignment:
Q  415 atctaacttattcctaatcctagttaacactccaattactactaaaaaccctaattctaagatttttaggcgccaat 491  Q
    |||||||||||||||||||||| |||||||||||||||   ||   |||||||||||||   |||||||||||||||    
T  1721556 atctaacttattcctaatcctaattaacactccaattaacgctgccaaccctaattctactgtttttaggcgccaat 1721632  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 449
Target Start/End: Complemental strand, 31771428 - 31771394
Alignment:
Q  415 atctaacttattcctaatcctagttaacactccaa 449  Q
    |||||||||||||||||||||||||||||||||||    
T  31771428 atctaacttattcctaatcctagttaacactccaa 31771394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 415 - 449
Target Start/End: Complemental strand, 7608440 - 7608406
Alignment:
Q  415 atctaacttattcctaatcctagttaacactccaa 449  Q
    ||||||||||||||||||||||||||| |||||||    
T  7608440 atctaacttattcctaatcctagttaaaactccaa 7608406  T

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Target: scaffold0152 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 410 - 512
Target Start/End: Original strand, 10190 - 10291
Alignment:
Q  410 attgcatctaacttattcctaatcctagttaacactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaatattagcccttggat 509  Q
    ||||||||||||||||||| |||||||||||||||||||||||  |||  ||||||||||||| |  |||||||||||||| ||||  ||||||||||||    
T  10190 attgcatctaacttattcccaatcctagttaacactccaattaacactccaaaccctaattct-acttttttaggcgccaaacaatcctagcccttggat 10288  T
Q  510 cta 512  Q
    |||    
T  10289 cta 10291  T

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Target: scaffold0003 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 415 - 512
Target Start/End: Complemental strand, 37062 - 36966
Alignment:
Q  415 atctaacttattcctaatcctagttaacactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaatattagcccttggatcta 512  Q
    |||||||||||||||||||||| |||||||||||||||  |||  ||| |||||||||    |||||||||||||| ||||  |||||||||||||||    
T  37062 atctaacttattcctaatcctaattaacactccaattaacacttcaaatcctaattct-tcttttttaggcgccaaacaatcctagcccttggatcta 36966  T

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Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 415 - 449
Target Start/End: Complemental strand, 43234 - 43200
Alignment:
Q  415 atctaacttattcctaatcctagttaacactccaa 449  Q
    ||||||||||||||||||| |||||||||||||||    
T  43234 atctaacttattcctaatcgtagttaacactccaa 43200  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 415 - 449
Target Start/End: Original strand, 32615 - 32649
Alignment:
Q  415 atctaacttattcctaatcctagttaacactccaa 449  Q
    |||||||||||| ||||||||||||||||||||||    
T  32615 atctaacttatttctaatcctagttaacactccaa 32649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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