View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20822_high_4 (Length: 538)
Name: NF20822_high_4
Description: NF20822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20822_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 2 - 520
Target Start/End: Complemental strand, 48187464 - 48186935
Alignment:
| Q |
2 |
ttttttaaagctaaaacaaatgcatcctttattattttatatttcaaatgttggatacagnnnnnnnn--gtctaatatttggttcttaatagtattatt |
99 |
Q |
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| T |
48187464 |
ttttttaaagttaaaacaaatgcatcctttattattttatatttcaaatgttggatacagaaaaaaaaaagtctaatatttggttcttaatagtattatt |
48187365 |
T |
|
| Q |
100 |
gctgaatttttaaattgttcatgacactccctttctcatgctaggtcccctacacaatttatcaacccacatgtttg--------atgtggagattcaac |
191 |
Q |
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| T |
48187364 |
gctgaatttttaaacagttcatgacactccctttctcatgctaggtcccctacacaatttatcaaaccacatgtttgtacaattgatgtggagatttaac |
48187265 |
T |
|
| Q |
192 |
ttacctatatgaaggtaaagtgtacgtagccagatgacagttgcacaatatttcttgcgaattttctctcagtaatttgtcgataacaagagattaaagc |
291 |
Q |
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| T |
48187264 |
ttacctatatgaaggtaaagtgtacgtagccagatgacagttgcacaatatttcttgcgaattttctctcagtaatttgtcgataacaagagattaaagc |
48187165 |
T |
|
| Q |
292 |
ctataatattgggtttggtta-cattgtatattccatattttatccaatttagcgtgggactcttaac--tatatatatatgttttctgcgctacaaaat |
388 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
48187164 |
ctataatattgggtttggttatcattgtatattccatatttcatccaatttagcgtgggactcttaactatatatatatatgttttctgcgctacaaaat |
48187065 |
T |
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| Q |
389 |
aacaaaactagcaaatggtacttttgcaaaactgcaatttgcaatcattggtcctggtttgtgtttttgctttcataacttgaaaagaacataaacagta |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| || |
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| T |
48187064 |
aacaaaactagcaaatggtacttttgcaaaactgcaatttgcaatcattggtcctgctt--tgtttttgctttcataacttgaaaagaacataaacaata |
48186967 |
T |
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| Q |
489 |
ctgattgtcactttcctgtgttctttttatct |
520 |
Q |
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| T |
48186966 |
ctgattgtcactttcctgtgttctttttatct |
48186935 |
T |
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