View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20822_high_9 (Length: 435)
Name: NF20822_high_9
Description: NF20822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20822_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 19 - 428
Target Start/End: Original strand, 30408836 - 30409245
Alignment:
| Q |
19 |
ctttcttgaccatcaggcttccgttccagattgtgttttgcatctttcccccatgactgaatgtttccccataccgaatcagcatcaactctatcacatg |
118 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30408836 |
ctttcttgaccatcaggcttccgttccggattgtgttttgcatctttcccccatgactgaatgtttccccataccgaatcagcatcaactctatcacatg |
30408935 |
T |
|
| Q |
119 |
tttcattggcttcagcattttctgatatctcatcactagaaggtactgatcctcggcgacatgaatgtggttttgcatggttatgattacccttgtaaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30408936 |
tttcattggcttcagcattttctgatatctcatcactagaaggtactgatcctcggcgacttgaatgtggttttgcatggttatgattacccttgtaaat |
30409035 |
T |
|
| Q |
219 |
aatttctgttatgtggccatcgtgtgatctttccacctttttcttgacctgacaattagaatgagtacatttgtagtagcttctcggatattcactacct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30409036 |
aatttctgttatgtggccatcgtgtgatctttccacctttttcttgacctgacaattagaatgagtacatttgtagtagcttctcggatattcactacct |
30409135 |
T |
|
| Q |
319 |
tttacttgtttttggccatattttctccaattataaccatcctctgaggtctttgctcctgctgcatgagacatctctttctgttctgcttctaagacat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30409136 |
tttacttgtttttggccatattttctccaattataaccatcctctgaggtctttgctcctgctgcatgagacatctctttctgttctgcttctaagacat |
30409235 |
T |
|
| Q |
419 |
gatgatgtcc |
428 |
Q |
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|||| ||||| |
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| T |
30409236 |
gatgttgtcc |
30409245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 117 - 428
Target Start/End: Original strand, 30395273 - 30395584
Alignment:
| Q |
117 |
tgtttcattggcttcagcattttctgatatctcatcactagaaggtactgatcctcggcgacatgaatgtggttttgcatggttatgattacccttgtaa |
216 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||| ||||| |
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| T |
30395273 |
tgtttcattggcttcagcattttctgacatttcatcactagaaggtactgatcctcgacgacttgaatttggttttgcatggttatgattaccactgtaa |
30395372 |
T |
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| Q |
217 |
ataatttctgttatgtggccatcgtgtgatctttccacctttttcttgacctgacaattagaatgagtacatttgtagtagcttctcggatattcactac |
316 |
Q |
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||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||| | |
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| T |
30395373 |
ataatttctcttatgttgccatcatgtgatctttccacctttttcctgacctgacaattagactgattacatttgtagtagcttctcggatattcactgc |
30395472 |
T |
|
| Q |
317 |
cttttacttgtttttggccatattttctccaattataaccatcctctgaggtctttgctcctgctgcatgagacatctctttctgttctgcttctaagac |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
30395473 |
cttttacttgtttttggccatattttctccaattataaccatcctgtaaggtctttgctcctgctgcatgagatatctctttctgttctgcttctaggac |
30395572 |
T |
|
| Q |
417 |
atgatgatgtcc |
428 |
Q |
| |
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|||||| ||||| |
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| T |
30395573 |
atgatgttgtcc |
30395584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 30395202 - 30395271
Alignment:
| Q |
19 |
ctttcttgaccatcaggcttccgttccagattgtgttttgcatctttcccccatgactgaatgtttcccc |
88 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||||||| || | |||||||||||||||| |
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| T |
30395202 |
ctttcttgaccatcaggcttccattccggattgtgttttgcatcttttcctcgcgactgaatgtttcccc |
30395271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 359
Target Start/End: Original strand, 26332563 - 26332619
Alignment:
| Q |
303 |
cggatattcactaccttttacttgtttttggccatattttctccaattataaccatc |
359 |
Q |
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||||| ||| || ||||| |||||||| || ||||||||||||||||| |||||||| |
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| T |
26332563 |
cggattttcgcttcctttcacttgtttctgtccatattttctccaattgtaaccatc |
26332619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 269 - 362
Target Start/End: Complemental strand, 2056390 - 2056297
Alignment:
| Q |
269 |
gacaattagaatgagtacatttgtagtagcttctcggatattcactaccttttacttgtttttggccatattttctccaattataaccatcctc |
362 |
Q |
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||||||| ||||||||||| |||||||| |||| || || || ||||| || ||||| |||||||||||||||||||||||||| |||||||| |
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| T |
2056390 |
gacaatttgaatgagtacacttgtagtaacttcgagggtactcgctacccttaacttgcttttggccatattttctccaattatatccatcctc |
2056297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 365
Target Start/End: Original strand, 26967038 - 26967134
Alignment:
| Q |
269 |
gacaattagaatgagtacatttgtagtagcttctcggatattcactaccttttacttgtttttggccatattttctccaattataaccatcctctga |
365 |
Q |
| |
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||||||||| | ||| ||||| || || ||||| |||| |||||| ||||| ||||||||||| ||||||||||||||||| || ||||| ||||| |
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| T |
26967038 |
gacaattagggtaagtgcatttataataacttcttggattttcacttcctttcacttgtttttgtccatattttctccaattgtatccatcatctga |
26967134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 359
Target Start/End: Original strand, 31615355 - 31615428
Alignment:
| Q |
286 |
catttgtagtagcttctcggatattcactaccttttacttgtttttggccatattttctccaattataaccatc |
359 |
Q |
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||||||||||| |||||||||| |||||| || || ||||| ||||| |||||||||| |||||| || ||||| |
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| T |
31615355 |
catttgtagtaacttctcggattttcacttcccttaacttgcttttgtccatattttcgccaattgtatccatc |
31615428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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