View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20822_low_11 (Length: 404)
Name: NF20822_low_11
Description: NF20822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20822_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 16 - 393
Target Start/End: Complemental strand, 13576982 - 13576605
Alignment:
| Q |
16 |
atttgattgcatagtaaactcttattctatatatagtgtatggctatagaaagagggaaatatgcatacacaagcataccatttgtatgcccgtggaaag |
115 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13576982 |
atttgattgcatagtaaactcttatcctatatatagtgtatggctatagaaagagggaaatatgcatacacaagcataccatttgtatgaccgtggaaag |
13576883 |
T |
|
| Q |
116 |
agcaagaaactggagaattctgttgatctgaataaagagtattgtatctcaaacattgtttctttatttgaacactagatgtagtttctttgctttgtga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13576882 |
agcaagaaactggagaattctgttgatctgaataaagagtattgcatctcaaacactgtttctttatttgaacactagatgtagtttctttgctttgtga |
13576783 |
T |
|
| Q |
216 |
ctgtgtgcagcacttgacctctaaatttccatgagcatgggatgaatatggcttgaagaaaataaggattggggataatttaactgcaaaaaccattata |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
13576782 |
ctgtgtgcagcacttgacctctaaatttccatgagcatgggatgaatatggcttgaagaaaataagggttggggataatttaacttcaaaatccattata |
13576683 |
T |
|
| Q |
316 |
atacttcttgtattagaaattgggaaggaggcaccaacaaaagtttttatgagagaaagatgataatgttggattctt |
393 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13576682 |
attcttcttgtattagaaattgggaagggggcaccaacaaaagttcttatgagagaaagatgataatgttggattctt |
13576605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University