View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20822_low_12 (Length: 366)
Name: NF20822_low_12
Description: NF20822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20822_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 7e-74; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 6241500 - 6241677
Alignment:
| Q |
1 |
atacttgagacttgtaaagttgttttctttctttttaaaagttagtctctatcacaggcaaaactatcacctaagaaatttacnnnnnnnaaggagcacc |
100 |
Q |
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| T |
6241500 |
atacttgagacttgtaaagttgttttttttctttttaaaaattagtctctatcacaggcaaaactatcacctaagaaatttactttttttaaggagcacc |
6241599 |
T |
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| Q |
101 |
taagaattttactttcaaagctatcttctaaaaacaggtgataagataattataatgttaaagtcattcaattttatt |
178 |
Q |
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| T |
6241600 |
taagaattttactttcaaagctatcttcaaaaaacaggtgataagataattataatgttaaagtcattcatttttatt |
6241677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 6212573 - 6212750
Alignment:
| Q |
1 |
atacttgagacttgtaaagttgttttctttctttttaaaagttagtctctatcacaggcaaaactatcacctaagaaatttacnnnnnnnaaggagcacc |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6212573 |
atacttgagacttgtaaagttgttttttttctttttaaaaattagtctttatcacaggcaaaactatcacctaagaaatttactttttttaaggagcacc |
6212672 |
T |
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| Q |
101 |
taagaattttactttcaaagctatcttctaaaaacaggtgataagataattataatgttaaagtcattcaattttatt |
178 |
Q |
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| T |
6212673 |
taagaattttactttcaaagctatcttcaaaaaacaggtgataagataattataatgttaaagtcattcatttttatt |
6212750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 6241687 - 6241800
Alignment:
| Q |
91 |
aaggagcacctaagaattttactttcaaagctatcttctaaaaacaggtgataagataattataatgttaaagtcattcaattttatttgcaaaatggaa |
190 |
Q |
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| T |
6241687 |
aaggagcacctaagaattttactttcaaagctatcttcaaaaaacaggtgataagataattataatgttaaagtcattcatttttatttgcaaaatggaa |
6241786 |
T |
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| Q |
191 |
atattaaaccgata |
204 |
Q |
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|||||||||||||| |
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| T |
6241787 |
atattaaaccgata |
6241800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 349
Target Start/End: Original strand, 8368659 - 8368741
Alignment:
| Q |
267 |
gggattgcttgagctactgccttgattaaagtttccttcccggcacgagaaagacatttttccttccatcccttgatattctt |
349 |
Q |
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||||| || ||||| ||||| |||||||||||||| ||||| ||||| || |||||||| || ||||| || ||||| ||||| |
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| T |
8368659 |
gggatagcctgagcaactgctttgattaaagtttctttcccagcacgggagagacatttctctttccagcctttgatcttctt |
8368741 |
T |
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