View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20822_low_14 (Length: 334)
Name: NF20822_low_14
Description: NF20822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20822_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 41705723 - 41705406
Alignment:
| Q |
1 |
tttggtttcaatggagtctaaagggcaatgagccattgtgcatagatcggaagagggggtggaactgtgtgctacagagcatgcatgggagttgcatgaa |
100 |
Q |
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| T |
41705723 |
tttggtttcaatggagtctaaagggcaatgagccattgtgcatagatcggaagagggggtggaactgtgtgctacagagcatgcatgggagttgcatgaa |
41705624 |
T |
|
| Q |
101 |
atgggggtgctgtgggagatgttggtagggggagagggatccgaggtaagcttgggttttaattcacagaggatgcagttgaacggtgtgcatgggaacc |
200 |
Q |
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| T |
41705623 |
atgggggtgctgtgggagatgttggtagggggagagggatccgaggtaagcttgggttttaattcacagaggatgcagttgaacggtgtgcatgggaacc |
41705524 |
T |
|
| Q |
201 |
aaacaaggtcacttcctgtgtccatgtagagagttatgggttgggagtggggtccgaggttgaaggagagagtgtaatcggagcctggtgagagtgggag |
300 |
Q |
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| T |
41705523 |
aaacaaggtcacttcctgtgtccatgtagagagttatgggttgggagtggggtccgaggttgaaggagagagtgtaatcggagcctggtgagagtgggag |
41705424 |
T |
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| Q |
301 |
agagagttggttgtggtg |
318 |
Q |
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| T |
41705423 |
agagagttggttgtggtg |
41705406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 3744338 - 3744418
Alignment:
| Q |
163 |
ttcacagaggatgcagttgaacggtgtgcatgggaaccaaacaaggtcacttcctgtgtccatgtagagagttatgggttg |
243 |
Q |
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| T |
3744338 |
ttcacagagaatgcattcgaaaggtgaacaagggaaccaaacaaggtcgctacctgtgtccatgtagagtgttatgagttg |
3744418 |
T |
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