View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20822_low_16 (Length: 300)
Name: NF20822_low_16
Description: NF20822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20822_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 1058622 - 1058903
Alignment:
| Q |
1 |
accgttgtcggattgttttggaagttgttgaagctgttgcaaatgagataggtgcagatagaactggaattagattatcacctttttcagaatatgcaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1058622 |
accgttgtcggattgttttggaagttgttgaagctgttgcaaatgagataggtgcagatagaactggaattagattatcacctttttcagaatatgcaga |
1058721 |
T |
|
| Q |
101 |
atgtgtagactctaatcccagagaattgggactttatatggctaatgccctcaataaatatggtattctttactgtcatgtggtggaaccaagaatgaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1058722 |
atgtgtagactctaatcccagagaattgggactttatatggctaatgccctcaataaatatggtattctttactgtcatgtggtggaaccaagaatgaaa |
1058821 |
T |
|
| Q |
201 |
actgttaatgaaagaattgaatgctctcacagccttgtgccgatgagaaaggccttcaaaggcactttcctggctgcaggag |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1058822 |
actgttaatgaaagaattgaatgctctcacagccttgtgccgatgagaaaggccttcaaaggcactttcctggctgcaggag |
1058903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 1065730 - 1065995
Alignment:
| Q |
17 |
tttggaagttgttgaagctgttgcaaatgagataggtgcagatagaactggaattagattatcacctttttcagaatatgcagaatgtgtagactctaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||| |||||| ||||||||||||||| | || ||||||||||||| |||||| || |
|
|
| T |
1065730 |
tttggaagttgttgaagctgttgcaaatgagataggagcagaaagagttggaataagattatcaccttttgcggagtatgcagaatgtggagactccaac |
1065829 |
T |
|
| Q |
117 |
cccagagaattgggactttatatggctaatgccctcaataaatatggtattctttactgtcatgtggtggaaccaagaatgaaaactgttaatgaaagaa |
216 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| || |
|
|
| T |
1065830 |
cccaatgaattgggactttatatggtcaatgccctcaataaatatggtattctttactgtcatatggtggaaccaagaatgaaaactgttggtgaaaaaa |
1065929 |
T |
|
| Q |
217 |
ttgaatgctctcacagccttgtgccgatgagaaaggccttcaaaggcactttcctggctgcaggag |
282 |
Q |
| |
|
||||||| | ||||||||||||| ||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
1065930 |
ctgaatgccccgacagccttgtgccaatgagaaaggccttcaaaggcactttcatggttgcaggag |
1065995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 1071441 - 1071722
Alignment:
| Q |
1 |
accgttgtcggattgttttggaagttgttgaagctgttgcaaatgagataggtgcagatagaactggaattagattatcacctttttcagaatatgcaga |
100 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||| ||| |||||| ||||||||||||||| |||| ||| |||| |
|
|
| T |
1071441 |
accgttgtcggtttgctttggaagttgttgaagctgttgcaaatgagataggaacagaaagagttggaataagattatcaccttttgcagagtattcaga |
1071540 |
T |
|
| Q |
101 |
atgtgtagactctaatcccagagaattgggactttatatggctaatgccctcaataaatatggtattctttactgtcatgtggtggaaccaagaatgaaa |
200 |
Q |
| |
|
||||| |||||| || || | |||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| | |
|
|
| T |
1071541 |
atgtggagactccaaccctaaagaattgggactttatatggttaatgccctcaataaatacggtattctttattgtcacatggtggaaccaagaatgata |
1071640 |
T |
|
| Q |
201 |
actgttaatgaaagaattgaatgctctcacagccttgtgccgatgagaaaggccttcaaaggcactttcctggctgcaggag |
282 |
Q |
| |
|
|||||| ||||| || ||||||| | ||||||||||||| ||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
1071641 |
actgttggtgaaaaaactgaatgccccgacagccttgtgccaatgagaaaggccttcaaaggcactttcatggttgcaggag |
1071722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 1053369 - 1053553
Alignment:
| Q |
13 |
ttgttttggaagttgttgaagctgttgcaaatgagataggtgcagatagaactggaattagattatcacctttttcagaatatgcagaatgtgtagactc |
112 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||| | ||||||||||||| | ||| || ||| |||| |||||| |
|
|
| T |
1053369 |
ttgttttggaaattgttgaagctgttgcaaatgagataggtgcagaaagagttggaataaaattatcaccttttgaaaaatttggagattgtggagactc |
1053468 |
T |
|
| Q |
113 |
taatcccagagaattgggactttatatggctaatgccctcaataaatatggtattctttactgtcatgtggtggaaccaagaatg |
197 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
1053469 |
aaatccccaagaattgggactttatatggtgaatgccctcaataaatatggtattctttattgtcatatggtggaaccaagaatg |
1053553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 17 - 268
Target Start/End: Complemental strand, 1640828 - 1640577
Alignment:
| Q |
17 |
tttggaagttgttgaagctgttgcaaatgagataggtgcagatagaactggaattagattatcacctttttcagaatatgcagaatgtgtagactctaat |
116 |
Q |
| |
|
||||||| |||||||||| |||| ||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||| |||||||| |||||| ||| |
|
|
| T |
1640828 |
tttggaaattgttgaagcagttgtgaatgagataggtgcagaaagagttggaattagattatcgcctttcgcagaatatggagaatgtggagactccaat |
1640729 |
T |
|
| Q |
117 |
cccagagaattgggactttatatggctaatgccctcaataaatatggtattctttactgtcatgtggtggaaccaagaatgaaaactgttaatgaaagaa |
216 |
Q |
| |
|
|| ||||||||| |||||||||| ||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||| ||| ||||| | |
|
|
| T |
1640728 |
cctgaagaattggggctttatatggttaatgccctcagtaaatacaatattctttactgtcacatggtggaaccaagaatgaaaactattactgaaaaag |
1640629 |
T |
|
| Q |
217 |
ttgaatgctctcacagccttgtgccgatgagaaaggccttcaaaggcacttt |
268 |
Q |
| |
|
||||||| ||||||| | ||||| |||||||| |||||||| || ||||| |
|
|
| T |
1640628 |
ttgaatgtcttcacagcttggtgccaatgagaaaagccttcaatggaacttt |
1640577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 1044115 - 1044380
Alignment:
| Q |
17 |
tttggaagttgttgaagctgttgcaaatgagataggtgcagatagaactggaattagattatcacctttttcagaatatgcagaatgtgtagactctaat |
116 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| ||||||| | |||||||||| ||||||||||| |||||||||||||| | | |||||| ||| |
|
|
| T |
1044115 |
tttggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaattagactatcaccttttgcagaatatgcagaaagcggagactccaat |
1044214 |
T |
|
| Q |
117 |
cccagagaattgggactttatatggctaatgccctcaataaatatggtattctttactgtcatgtggtggaaccaagaatgaaaactgttaatgaaagaa |
216 |
Q |
| |
|
|||| |||||||||||| |||||| ||||||||||||||| || ||||||||||||||| |||||||||||||||| ||| | | | ||||| | |
|
|
| T |
1044215 |
cccaatgaattgggacttcatatggttaatgccctcaataagtacaatattctttactgtcacatggtggaaccaagaataaaatcagcttctgaaacga |
1044314 |
T |
|
| Q |
217 |
ttgaatgctctcacagccttgtgccgatgagaaaggccttcaaaggcactttcctggctgcaggag |
282 |
Q |
| |
|
||||| || || |||| || ||||| ||||||||||| ||||| ||| ||||| |||||||||||| |
|
|
| T |
1044315 |
ttgaaagcccttacagtctggtgccaatgagaaaggctttcaatggctctttcatggctgcaggag |
1044380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 1033729 - 1033993
Alignment:
| Q |
18 |
ttggaagttgttgaagctgttgcaaatgagataggtgcagatagaactggaattagattatcacctttttcagaatatgcagaatgtgtagactctaatc |
117 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||| ||||| ||| |||||||||||||||||||||| | ||| || |||||| | |||||| |||| |
|
|
| T |
1033729 |
ttggaagttgttgacgctgttgtgaatgagataggagcagaaagagttggaattagattatcaccttttgcggaacattcagaatctagagactccaatc |
1033828 |
T |
|
| Q |
118 |
ccagagaattgggactttatatggctaatgccctcaataaatatggtattctttactgtcatgtggtggaaccaagaatgaaaactgttaatgaaagaat |
217 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||||| ||| | | |||||| || |
|
|
| T |
1033829 |
ccacagaattgggactttatatggttaatgccctcaataagtacaatattctttactgtcacatggtggaaccaagaataaaatcaaatgatgaaacgat |
1033928 |
T |
|
| Q |
218 |
tgaatgctctcacagccttgtgccgatgagaaaggccttcaaaggcactttcctggctgcaggag |
282 |
Q |
| |
|
|||| || || |||| || ||||| ||||||||||| ||||| || |||||| ||| ||| |||| |
|
|
| T |
1033929 |
tgaaagcccttacagtctggtgcccatgagaaaggctttcaatggtactttcatggttgcgggag |
1033993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 1046694 - 1046865
Alignment:
| Q |
13 |
ttgttttggaagttgttgaagctgttgcaaatgagataggtgcagatagaactggaattagattatcacctttttcagaatatgcagaatgtgtagactc |
112 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||| ||||| || ||| |||||| | | |||||||||||||||| | | |||||||| |||||| |
|
|
| T |
1046694 |
ttgttttggaaattgttgaagctgttgtaaatgagattggtgccgaaagagttggaataaaactatcacctttttcagatttcgaagaatgtggagactc |
1046793 |
T |
|
| Q |
113 |
taatcccagagaattgggactttatatggctaatgccctcaataaatatggtattctttactgtcatgtggt |
184 |
Q |
| |
|
||||| | | |||||| ||||| |||| ||||||||||||||||||||||||||| || |||||| |||| |
|
|
| T |
1046794 |
aaatccgaaggcattggggctttacatggttaatgccctcaataaatatggtattctgtattgtcatatggt |
1046865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 44171318 - 44171260
Alignment:
| Q |
18 |
ttggaagttgttgaagctgttgcaaatgagataggtgcagatagaactggaattagatt |
76 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||| | | |||||||||||| |
|
|
| T |
44171318 |
ttggaagttgttgaagctgttgtgaatgagataggagcagaaaaagttggaattagatt |
44171260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 44191614 - 44191556
Alignment:
| Q |
18 |
ttggaagttgttgaagctgttgcaaatgagataggtgcagatagaactggaattagatt |
76 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||| | | |||||||||||| |
|
|
| T |
44191614 |
ttggaagttgttgaagctgttgtgaatgagataggagcagaaaaagttggaattagatt |
44191556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University