View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20822_low_21 (Length: 221)
Name: NF20822_low_21
Description: NF20822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20822_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 3743846 - 3744026
Alignment:
| Q |
20 |
ataagtgacagactatcagcaacagcaactggctttacaaattcagttcatctacgtccaacttcgtcaagaccgtatatgacccacaacacaattgacc |
119 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3743846 |
ataagtaacagactaccagcaacagcaactggctttacaaattcagtttatctacgtccaacttcgtcaagaccgtatatgacccaca-----attgacc |
3743940 |
T |
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| Q |
120 |
cggactgttcatgcattttttgaaagggcgcaacgattttacacagatattctctgtataatgtaattttgagaatccccatatca |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
3743941 |
cggactgttcatgcattttttgaaagggcgcaacgattttacacatttattctctgtataatgtaattttgagaagccccatatca |
3744026 |
T |
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