View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20822_low_6 (Length: 523)
Name: NF20822_low_6
Description: NF20822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20822_low_6 |
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| [»] scaffold1333 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 6241524 - 6241245
Alignment:
| Q |
1 |
aaacaactttacaagtctcaagtatccacttacaagataactttgttctatagaagggtttcaaacgtattaaaccgcaaaagcgcgtcatcttttatat |
100 |
Q |
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| T |
6241524 |
aaacaactttacaagtctcaagtatccacttacaagataactttgttcaatagaagggtttcaaacgtattaaaccgcaaaagcgcgtcatcttt-atat |
6241426 |
T |
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| Q |
101 |
gtaataaaaat------gagtctctaagatgtagacaaggaaataagatattgcaccgtttgacttatattccaccatttgagtttacacatatatacat |
194 |
Q |
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| T |
6241425 |
gtaataaaaataaaaatgagtctctaagatgtagacaaggaaataagatattgcaccgtttgacttgtattccaccatttgagtttacacatatatacat |
6241326 |
T |
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| Q |
195 |
ggctaatattagggtagtcctacattgttaaacattttttatgatgtatacatacagtaattattagatatgatgtaaaatattttgtactgaaaaaca |
293 |
Q |
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| T |
6241325 |
ggctaatattagggtagtcctacattgtt--acat----------------atacagtaattattagatatgatgtaaaatattttgtactgaaaaaca |
6241245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 6212597 - 6212318
Alignment:
| Q |
1 |
aaacaactttacaagtctcaagtatccacttacaagataactttgttctatagaagggtttcaaacgtattaaaccgcaaaagcgcgtcatcttttatat |
100 |
Q |
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| T |
6212597 |
aaacaactttacaagtctcaagtatccacttacaagataactttgttctatagaagggtttaaaacgtattaaaccgcaaaagcgcgtcatcttttatat |
6212498 |
T |
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| Q |
101 |
gtaataaaaatgagtctctaag--atgtagacaaggaaataagatattgcaccgtttgact----tatattccaccatttgagtttacacatatatacat |
194 |
Q |
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| T |
6212497 |
gtaataaaaatgagtctctaagatatgtagacaaggaaataagatattgcaccgtttgacttatatatattccaccatttgag-ttacacatatatacat |
6212399 |
T |
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| Q |
195 |
ggctaatattagggtagtcctacattgttaaacattttttatgatgtatacatacagtaattattagatatgatgtaaaatattttgtactgaaaaaca |
293 |
Q |
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| T |
6212398 |
ggctaatattagggtagtcctacattgtt--acat----------------atacagtaattattagatatgatgtaaaatattttgtaatgaaaaaca |
6212318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 287 - 361
Target Start/End: Original strand, 6241726 - 6241800
Alignment:
| Q |
287 |
aaaaacaggtgataagataattataatgttaaagtcattcaattttatttgcaaaatggaaatattaaaccgata |
361 |
Q |
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| T |
6241726 |
aaaaacaggtgataagataattataatgttaaagtcattcatttttatttgcaaaatggaaatattaaaccgata |
6241800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 6212702 - 6212750
Alignment:
| Q |
287 |
aaaaacaggtgataagataattataatgttaaagtcattcaattttatt |
335 |
Q |
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| T |
6212702 |
aaaaacaggtgataagataattataatgttaaagtcattcatttttatt |
6212750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 6241629 - 6241677
Alignment:
| Q |
287 |
aaaaacaggtgataagataattataatgttaaagtcattcaattttatt |
335 |
Q |
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| T |
6241629 |
aaaaacaggtgataagataattataatgttaaagtcattcatttttatt |
6241677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1333 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold1333
Description:
Target: scaffold1333; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 148 - 94
Alignment:
| Q |
174 |
tgagtttacacatatatacatggctaatattagggtagtcctacattgttaaaca |
228 |
Q |
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| T |
148 |
tgagtttacacacacatacatggctaatatttggctagttttacattgttaaaca |
94 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1333; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 250 - 201
Alignment:
| Q |
52 |
agaagggtttcaaacgtattaaaccgcaaaagcgcgtcatcttttatatg |
101 |
Q |
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| T |
250 |
agaatggtttcgaacgtattaaaccccaaaagcatgtcatcttttatatg |
201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 506
Target Start/End: Original strand, 8368659 - 8368741
Alignment:
| Q |
424 |
gggattgcttgagctactgccttgattaaagtttccttcccggcacgagaaagacatttttccttccatcccttgatattctt |
506 |
Q |
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| T |
8368659 |
gggatagcctgagcaactgctttgattaaagtttctttcccagcacgggagagacatttctctttccagcctttgatcttctt |
8368741 |
T |
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