View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20822_low_7 (Length: 477)
Name: NF20822_low_7
Description: NF20822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20822_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 136 - 452
Target Start/End: Complemental strand, 6240968 - 6240653
Alignment:
| Q |
136 |
gaaggatacaaatgaaaataaaattattctttttccaacacaatttcctatctcctctctgatgaatgttctaaaattataagccaatctggatgcgaac |
235 |
Q |
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| T |
6240968 |
gaaggataaaaatgaaaataaaattattctttttccaacacaatttcctatctcctctctgatgaatgttctaaaattataagccaatccggatgcgaac |
6240869 |
T |
|
| Q |
236 |
gactttttcacgaatctacttgaaattgtgcttgatttatttttagaagtaacattaatgcttctaatattcttccatctaacttttaagataaaaatgc |
335 |
Q |
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|||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6240868 |
gactttttcacgaatctacttgaaattgtgattgatt-acttttagaagtaacattaatgcttctaatattcttccatctaacttttaagataaaaatgc |
6240770 |
T |
|
| Q |
336 |
ttctattatctactacatagtgctcatcaccatcccactctcaatttttaggccaaatatctcctagtgttcttgaaagtttacacttagttataaatat |
435 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||| |
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| T |
6240769 |
ttctattgtctactacatagtgctcatcaccatcccactctcaatttttaggccaaatatctcctagtgttctttaaagtttaaacttggttataaatat |
6240670 |
T |
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| Q |
436 |
ttacttgcatactttga |
452 |
Q |
| |
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||||||||||||||||| |
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| T |
6240669 |
ttacttgcatactttga |
6240653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 136 - 303
Target Start/End: Complemental strand, 6212075 - 6211909
Alignment:
| Q |
136 |
gaaggatacaaatgaaaataaaattattctttttccaacacaatttcctatctcctctctgatgaatgttctaaaattataagccaatctggatgcgaac |
235 |
Q |
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| T |
6212075 |
gaaggatacaaatgaaaacaaaattattctttttccaacacaatttcctatctcctctctgatgaatgttctaaaattataagccaatccggatgcgaac |
6211976 |
T |
|
| Q |
236 |
gactttttcacgaatctacttgaaattgtgcttgatttatttttagaagtaacattaatgcttctaat |
303 |
Q |
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| T |
6211975 |
aactttttcacgaatctacatgaaattgtgattga-ttatttttagaagtaacattaatgcttctaat |
6211909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 286 - 452
Target Start/End: Complemental strand, 6211890 - 6211717
Alignment:
| Q |
286 |
aacattaatgcttctaatattcttcca-------tctaacttttaagataaaaatgcttctattatctactacatagtgctcatcaccatcccactctca |
378 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6211890 |
aacattaatgcttctaatattcttccaagttccatctaacttctaagataaaaatgcttctattatctactacatagtgctcatcgccatcccactctca |
6211791 |
T |
|
| Q |
379 |
atttttaggccaaatatctcctagtgttcttgaaagtttacacttagttataaatatttacttgcatactttga |
452 |
Q |
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| T |
6211790 |
atttttaggccaaatacctcctagtgttgtttaaagtttacacttagttataaatatttacttgcatactttga |
6211717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 6241103 - 6241033
Alignment:
| Q |
1 |
tttttatacatgaaagtaacaattgttttaatttttaaatcactgacatttgttagcgaaaccttttaaaa |
71 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6241103 |
tttttatacatgaaagtaacaattgttttcatttttaaatcactgacatttgttagcgaaaccctttaaaa |
6241033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 6212177 - 6212141
Alignment:
| Q |
3 |
tttatacatgaaagtaacaattgttttaatttttaaa |
39 |
Q |
| |
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||||||||||||| ||||||||||||| ||||||||| |
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| T |
6212177 |
tttatacatgaaaataacaattgttttcatttttaaa |
6212141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 170 - 450
Target Start/End: Original strand, 19115708 - 19115992
Alignment:
| Q |
170 |
ccaacacaatttcctatctcctctctgatgaatgttctaaaattataagccaatctggatgcgaacgactttt---tcacgaatctacttgaaattgtgc |
266 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||| ||| | | ||| ||| || | || ||||||||||||||||||||||| |
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| T |
19115708 |
ccaacacaatttcctatctcctctttgatgaagattctaaaattataagacaagccgaatgtgaaggaatattacttcacgaatctacttgaaattgtga |
19115807 |
T |
|
| Q |
267 |
ttgatttatttttagaagtaacattaatgcttctaatattcttccatctaacttttaagataaaaatgcttctattatctactacatagtgctcatcacc |
366 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| || |||||||||| |||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
19115808 |
ttgattgatttttagaagtaacattaatgcttctaatattcacccttctaacttttgagatgaaaatgcttctattatctactgcatagtgctcatcacc |
19115907 |
T |
|
| Q |
367 |
atcccactctcaatttttaggccaaa-tatctcctagtgttcttgaaagtttacacttagttataaatatttacttgcatacttt |
450 |
Q |
| |
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|||||||||||||||||||||||||| || |||||| ||||| || ||| ||||||| |||||||||||||||| |||||| |
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|
| T |
19115908 |
atcccactctcaatttttaggccaaattacctcctatgattctttaagttttgcacttaggaataaatatttacttgcgtacttt |
19115992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 6e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 184 - 450
Target Start/End: Complemental strand, 19610268 - 19610000
Alignment:
| Q |
184 |
tatctcctctctgatgaatgttctaaaattataagccaatctggatgcgaacgactttttcacgaatctacttgaaattgtgcttgatttatttttagaa |
283 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||| ||| || |||||||| || | | |||| ||||||||| |||||||| ||||||||||||||||| |
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| T |
19610268 |
tatctcctctctgatgaagattctgaaattataaggcaagctagatgcgaaggattatgtcacaaatctacttaaaattgtgattgatttatttttagaa |
19610169 |
T |
|
| Q |
284 |
gtaacattaatgcttctaatattcttccatctaacttttaagataaaaatgcttctattatctactacatagtgct---catcaccatcccactctcaat |
380 |
Q |
| |
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|||||||| ||| ||||||||||| | |||||||||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||| ||||||| |
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| T |
19610168 |
gtaacattgatgtttctaatattccctcttctaacttttgagataaaaatgcttctattatctactgcatagtgctcaacatcatcatcccaatctcaat |
19610069 |
T |
|
| Q |
381 |
ttttaggccaaatatctcctagtgttcttgaaagtttacacttagttataaatatttacttgcatacttt |
450 |
Q |
| |
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||||||||| |||| ||| ||| ||| || || |||||||||||||||||||||||||||||||||||| |
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|
| T |
19610068 |
ttttaggcctaatacctcttag-gttttttaagttttacacttagttataaatatttacttgcatacttt |
19610000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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