View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20822_low_8 (Length: 454)

Name: NF20822_low_8
Description: NF20822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20822_low_8
NF20822_low_8
[»] chr1 (29 HSPs)
chr1 (13-437)||(11903731-11904155)
chr1 (13-270)||(11881231-11881488)
chr1 (13-270)||(11890597-11890854)
chr1 (251-437)||(11881508-11881694)
chr1 (251-437)||(11904101-11904287)
chr1 (251-437)||(11904233-11904419)
chr1 (251-437)||(11904365-11904551)
chr1 (251-437)||(11904497-11904683)
chr1 (251-426)||(11881772-11881947)
chr1 (251-437)||(11881640-11881826)
chr1 (254-437)||(11890877-11891060)
chr1 (251-426)||(11891006-11891181)
chr1 (251-426)||(11904629-11904804)
chr1 (330-437)||(11881455-11881562)
chr1 (330-437)||(11890821-11890928)
chr1 (71-253)||(52819828-52820010)
chr1 (369-426)||(52819184-52819241)
chr1 (251-309)||(11881904-11881962)
chr1 (251-309)||(11891138-11891196)
chr1 (330-402)||(52819772-52819844)
chr1 (251-309)||(11904761-11904819)
chr1 (251-315)||(52819163-52819227)
chr1 (341-402)||(52819604-52819665)
chr1 (336-372)||(11879623-11879659)
chr1 (330-366)||(11882475-11882511)
chr1 (330-366)||(11891709-11891745)
chr1 (330-366)||(52818632-52818668)
chr1 (330-366)||(52818824-52818860)
chr1 (257-309)||(52819697-52819749)


Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 13 - 437
Target Start/End: Original strand, 11903731 - 11904155
Alignment:
Q  13 catcacagttaaggactttgactatgtcaaatatggttccacagtgtgcaaggctgccctatatgctccacctaagggttcacccttcaatatacctaca 112  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||    
T  11903731 catcacagttaaggactttgactatgtcaaatatggttcgacagtgtgcaaggctaccctttatgctccacctaagggttcacccttcaacatacctaca 11903830  T
Q  113 aagctaaatcaaggaacaaagttgtacttgaaatccaaagacaagtacgaggttgtgctcaaggctaagccatttgcttatgcttcaaagaaacatttca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11903831 aagctaaatcaaggaacaaagttgtacttgaaatccaaagacaagtacgaggttgtgctcaaggctaagccatttgcttatgcttcaaagaaacatttca 11903930  T
Q  213 aagaatgtgagaagcctaagccttcaccaactccttactacaactcaccacctccacccgtccattattactcacctccatattactacaagtcaccccc 312  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11903931 aagaatgtgagaagcctaagccttcaccaactcctttctacaactcaccacctccacccgtccattattactcacctccatattactacaagtcaccccc 11904030  T
Q  313 tcctcctgtgaaagcggcaccaactccttactactacaaatcacctccaccacccgcaccggtttacaagtacaactcaccacctccaccggtccattat 412  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  11904031 tccccctgtgaaagcggcaccaactccttactactacaaatcacctccaccacccgcaccggtttacaagtacaactccccacctccaccagtccattat 11904130  T
Q  413 tattcaccaccatatacctacaagt 437  Q
    |||||||||||||||||||||||||    
T  11904131 tattcaccaccatatacctacaagt 11904155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 11881231 - 11881488
Alignment:
Q  13 catcacagttaaggactttgactatgtcaaatatggttccacagtgtgcaaggctgccctatatgctccacctaagggttcacccttcaatatacctaca 112  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11881231 catcacagttaaggactttgactatgtcaaatatggttcgacagtgtgcaaggctgccctatatgctccacctaagggttcacccttcaacatacctaca 11881330  T
Q  113 aagctaaatcaaggaacaaagttgtacttgaaatccaaagacaagtacgaggttgtgctcaaggctaagccatttgcttatgcttcaaagaaacatttca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11881331 aagctaaatcaaggaacaaagttgtacttgaaatccaaagacaagtacgaggttgtgctcaaggctaagccatttgcttatgcttcaaagaaacatttca 11881430  T
Q  213 aagaatgtgagaagcctaagccttcaccaactccttactacaactcaccacctccacc 270  Q
    ||||||||||||||||||||||||||||||||||||||||| ||  | ||||||||||    
T  11881431 aagaatgtgagaagcctaagccttcaccaactccttactactacaaatcacctccacc 11881488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 11890597 - 11890854
Alignment:
Q  13 catcacagttaaggactttgactatgtcaaatatggttccacagtgtgcaaggctgccctatatgctccacctaagggttcacccttcaatatacctaca 112  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  11890597 catcacagttaaggactttgactatgtcaaatatggttcaacagtgtgcaaggctgccctttatgctccacctaagggttcacccttcaacatacctaca 11890696  T
Q  113 aagctaaatcaaggaacaaagttgtacttgaaatccaaagacaagtacgaggttgtgctcaaggctaagccatttgcttatgcttcaaagaaacatttca 212  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11890697 aagctaaaccaaggaacaaacttgtacttgaaatccaaagacaagtacgaggttgtgctcaaggctaagccatttgcttatgcttcaaagaaacatttca 11890796  T
Q  213 aagaatgtgagaagcctaagccttcaccaactccttactacaactcaccacctccacc 270  Q
    |||||||||||||| | |||||||||||||||||||||||| ||  | ||||||||||    
T  11890797 aagaatgtgagaagtccaagccttcaccaactccttactactacaaatcacctccacc 11890854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 251 - 437
Target Start/End: Original strand, 11881508 - 11881694
Alignment:
Q  251 tacaactcaccacctccacccgtccattattactcacctccatattactacaagtcaccccctcctcctgtgaaagcggcaccaactccttactactaca 350  Q
    |||||||||||||||||||| ||||||||||| |||||||||||   |||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  11881508 tacaactcaccacctccaccggtccattattattcacctccatacacctacaagtcacctcctccccctgtgaaagcggcaccaactccttactactaca 11881607  T
Q  351 aatcacctccaccacccgcaccggtttacaagtacaactcaccacctccaccggtccattattattcaccaccatatacctacaagt 437  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  11881608 aatcacctccaccacccgcaccggtttacaagtacaactcaccccctccaccggtccattattattcaccaccatatacctataagt 11881694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 251 - 437
Target Start/End: Original strand, 11904101 - 11904287
Alignment:
Q  251 tacaactcaccacctccacccgtccattattactcacctccatattactacaagtcaccccctcctcctgtgaaagcggcaccaactccttactactaca 350  Q
    |||||||| ||||||||||| ||||||||||| ||||| ||||||  |||||||||||| ||||| ||||||||| |||||||||||||||||||||| |    
T  11904101 tacaactccccacctccaccagtccattattattcaccaccatatacctacaagtcacctcctccacctgtgaaaacggcaccaactccttactactata 11904200  T
Q  351 aatcacctccaccacccgcaccggtttacaagtacaactcaccacctccaccggtccattattattcaccaccatatacctacaagt 437  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11904201 aatcacctccaccacccgcaccggtttacaagtacaactccccacctccaccggtccattattattcaccaccatatacctacaagt 11904287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 251 - 437
Target Start/End: Original strand, 11904233 - 11904419
Alignment:
Q  251 tacaactcaccacctccacccgtccattattactcacctccatattactacaagtcaccccctcctcctgtgaaagcggcaccaactccttactactaca 350  Q
    |||||||| ||||||||||| ||||||||||| ||||| ||||||  |||||||||||| ||||| ||||||||| |||||||||||||||||||||| |    
T  11904233 tacaactccccacctccaccggtccattattattcaccaccatatacctacaagtcacctcctccacctgtgaaaacggcaccaactccttactactata 11904332  T
Q  351 aatcacctccaccacccgcaccggtttacaagtacaactcaccacctccaccggtccattattattcaccaccatatacctacaagt 437  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11904333 aatcacctccaccacccgcaccggtttacaagtacaactccccacctccaccggtccattattattcaccaccatatacctacaagt 11904419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 251 - 437
Target Start/End: Original strand, 11904365 - 11904551
Alignment:
Q  251 tacaactcaccacctccacccgtccattattactcacctccatattactacaagtcaccccctcctcctgtgaaagcggcaccaactccttactactaca 350  Q
    |||||||| ||||||||||| ||||||||||| ||||| ||||||  |||||||||||| ||||| ||||||||| |||||||||||||||||||||| |    
T  11904365 tacaactccccacctccaccggtccattattattcaccaccatatacctacaagtcacctcctccacctgtgaaaacggcaccaactccttactactata 11904464  T
Q  351 aatcacctccaccacccgcaccggtttacaagtacaactcaccacctccaccggtccattattattcaccaccatatacctacaagt 437  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11904465 aatcacctccaccacccgcaccggtttacaagtacaactccccacctccaccggtccattattattcaccaccatatacctacaagt 11904551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 251 - 437
Target Start/End: Original strand, 11904497 - 11904683
Alignment:
Q  251 tacaactcaccacctccacccgtccattattactcacctccatattactacaagtcaccccctcctcctgtgaaagcggcaccaactccttactactaca 350  Q
    |||||||| ||||||||||| ||||||||||| ||||| ||||||  |||||||||||| ||||| ||||||||| |||||||||||||||||||||| |    
T  11904497 tacaactccccacctccaccggtccattattattcaccaccatatacctacaagtcacctcctccacctgtgaaaacggcaccaactccttactactata 11904596  T
Q  351 aatcacctccaccacccgcaccggtttacaagtacaactcaccacctccaccggtccattattattcaccaccatatacctacaagt 437  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11904597 aatcacctccaccacccgcaccggtttacaagtacaactccccacctccaccggtccattattattcaccaccatatacctacaagt 11904683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 251 - 426
Target Start/End: Original strand, 11881772 - 11881947
Alignment:
Q  251 tacaactcaccacctccacccgtccattattactcacctccatattactacaagtcaccccctcctcctgtgaaagcggcaccaactccttactactaca 350  Q
    |||||||| ||||||||||| ||||||||||| ||||||||||||  |||||||||||| ||||| |||||||||| |||||||||||||||||||||||    
T  11881772 tacaactccccacctccaccggtccattattattcacctccatatacctacaagtcacctcctccccctgtgaaagtggcaccaactccttactactaca 11881871  T
Q  351 aatcacctccaccacccgcaccggtttacaagtacaactcaccacctccaccggtccattattattcaccaccata 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11881872 aatcacctccaccacccgcaccggtttacaagtacaactcaccacctccaccggtccattattattctccaccata 11881947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 251 - 437
Target Start/End: Original strand, 11881640 - 11881826
Alignment:
Q  251 tacaactcaccacctccacccgtccattattactcacctccatattactacaagtcaccccctcctcctgtgaaagcggcaccaactccttactactaca 350  Q
    ||||||||||| |||||||| ||||||||||| ||||| ||||||  ||| |||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  11881640 tacaactcaccccctccaccggtccattattattcaccaccatatacctataagtcacctcctccccctgtgaaagcggcaccaactccttactactaca 11881739  T
Q  351 aatcacctccaccacccgcaccggtttacaagtacaactcaccacctccaccggtccattattattcaccaccatatacctacaagt 437  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  11881740 aatcacctccacctcccgcaccggtttacaagtacaactccccacctccaccggtccattattattcacctccatatacctacaagt 11881826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 254 - 437
Target Start/End: Original strand, 11890877 - 11891060
Alignment:
Q  254 aactcaccacctccacccgtccattattactcacctccatattactacaagtcaccccctcctcctgtgaaagcggcaccaactccttactactacaaat 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  11890877 aactcaccacctccacccgtccattattactcacctccatattactacaagtcacctcctccccccgtgaaagcggcaccaactccttactactacaaat 11890976  T
Q  354 cacctccaccacccgcaccggtttacaagtacaactcaccacctccaccggtccattattattcaccaccatatacctacaagt 437  Q
    |||||||||| |||||||| ||||||||||||||||| |||||||| || |||||||| |||||||| ||||| ||||| ||||    
T  11890977 cacctccacctcccgcaccagtttacaagtacaactccccacctccgccagtccattactattcacctccatacacctataagt 11891060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 251 - 426
Target Start/End: Original strand, 11891006 - 11891181
Alignment:
Q  251 tacaactcaccacctccacccgtccattattactcacctccatattactacaagtcaccccctcctcctgtgaaagcggcaccaactccttactactaca 350  Q
    |||||||| |||||||| || |||||||| || |||||||||||   ||| |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  11891006 tacaactccccacctccgccagtccattactattcacctccatacacctataagtcacctcctcctcctgtgaaagcagcaccaactccttactactaca 11891105  T
Q  351 aatcacctccaccacccgcaccggtttacaagtacaactcaccacctccaccggtccattattattcaccaccata 426  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11891106 aatcacctccacctcccgcaccggtttacaagtacaactcaccacctccaccggtccattattattctccaccata 11891181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 251 - 426
Target Start/End: Original strand, 11904629 - 11904804
Alignment:
Q  251 tacaactcaccacctccacccgtccattattactcacctccatattactacaagtcaccccctcctcctgtgaaagcggcaccaactccttactactaca 350  Q
    |||||||| ||||||||||| ||||||||||| ||||| ||||||  |||||||||||| ||||| ||||||||||  ||||||||||| ||||||||||    
T  11904629 tacaactccccacctccaccggtccattattattcaccaccatatacctacaagtcacctcctccccctgtgaaagtagcaccaactccatactactaca 11904728  T
Q  351 aatcacctccaccacccgcaccggtttacaagtacaactcaccacctccaccggtccattattattcaccaccata 426  Q
    ||||||||||||| || ||||||||||| |||||||||||||| |||||||| |||||||||||||| || |||||    
T  11904729 aatcacctccacctcctgcaccggtttataagtacaactcacctcctccaccagtccattattattctcctccata 11904804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 330 - 437
Target Start/End: Original strand, 11881455 - 11881562
Alignment:
Q  330 caccaactccttactactacaaatcacctccaccacccgcaccggtttacaagtacaactcaccacctccaccggtccattattattcaccaccatatac 429  Q
    |||||||||||||||||||||||||||||||||| ||| |||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||    
T  11881455 caccaactccttactactacaaatcacctccacctccctcaccagtttacaaatacaactcaccacctccaccggtccattattattcacctccatacac 11881554  T
Q  430 ctacaagt 437  Q
    ||||||||    
T  11881555 ctacaagt 11881562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 330 - 437
Target Start/End: Original strand, 11890821 - 11890928
Alignment:
Q  330 caccaactccttactactacaaatcacctccaccacccgcaccggtttacaagtacaactcaccacctccaccggtccattattattcaccaccatatac 429  Q
    |||||||||||||||||||||||||||||||||| ||| |||| ||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||||      
T  11890821 caccaactccttactactacaaatcacctccacctccctcaccagtttacaagtataactcaccacctccacccgtccattattactcacctccatatta 11890920  T
Q  430 ctacaagt 437  Q
    ||||||||    
T  11890921 ctacaagt 11890928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 71 - 253
Target Start/End: Complemental strand, 52820010 - 52819828
Alignment:
Q  71 ctatatgctccacctaagggttcacccttcaatatacctacaaagctaaatcaaggaacaaagttgtacttgaaatccaaagacaagtacgaggttgtgc 170  Q
    ||||||||||||||||| |  || |||||||| |||||||| ||||| ||| | |||||  | ||| |  | ||||| ||||||||||| || |||||||    
T  52820010 ctatatgctccacctaaagactctcccttcaacatacctactaagctcaatgagggaactgacttgaaggtaaaatctaaagacaagtatgaagttgtgc 52819911  T
Q  171 tcaaggctaagccatttgcttatgcttcaaagaaacatttcaaagaatgtgagaagcctaagccttcaccaactccttactac 253  Q
    |||||||||||||||| || |||||||| ||||| ||||   |||||||||| || |||||||||||||||||||||||||||    
T  52819910 tcaaggctaagccattcgcatatgcttctaagaagcattatgaagaatgtgaaaaacctaagccttcaccaactccttactac 52819828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 426
Target Start/End: Complemental strand, 52819241 - 52819184
Alignment:
Q  369 caccggtttacaagtacaactcaccacctccaccggtccattattattcaccaccata 426  Q
    |||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||||    
T  52819241 caccagtttacaagtacaagtcaccacctccacctgtccattattattctccaccata 52819184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 251 - 309
Target Start/End: Original strand, 11881904 - 11881962
Alignment:
Q  251 tacaactcaccacctccacccgtccattattactcacctccatattactacaagtcacc 309  Q
    |||||||||||||||||||| ||||||||||| || || ||||| ||||||||||||||    
T  11881904 tacaactcaccacctccaccggtccattattattctccaccatactactacaagtcacc 11881962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 251 - 309
Target Start/End: Original strand, 11891138 - 11891196
Alignment:
Q  251 tacaactcaccacctccacccgtccattattactcacctccatattactacaagtcacc 309  Q
    |||||||||||||||||||| ||||||||||| || || ||||| ||||||||||||||    
T  11891138 tacaactcaccacctccaccggtccattattattctccaccatactactacaagtcacc 11891196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 402
Target Start/End: Complemental strand, 52819844 - 52819772
Alignment:
Q  330 caccaactccttactactacaaatcacctccaccacccgcaccggtttacaagtacaactcaccacctccacc 402  Q
    |||||||||||||||||||||| |||||||| || ||  |||||||||| |  ||||| ||||||||||||||    
T  52819844 caccaactccttactactacaagtcacctcctcctccttcaccggtttatatatacaagtcaccacctccacc 52819772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 309
Target Start/End: Original strand, 11904761 - 11904819
Alignment:
Q  251 tacaactcaccacctccacccgtccattattactcacctccatattactacaagtcacc 309  Q
    ||||||||||| |||||||| ||||||||||| || |||||||| ||||| ||||||||    
T  11904761 tacaactcacctcctccaccagtccattattattctcctccatactactataagtcacc 11904819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 315
Target Start/End: Complemental strand, 52819227 - 52819163
Alignment:
Q  251 tacaactcaccacctccacccgtccattattactcacctccatattactacaagtcaccccctcc 315  Q
    ||||| |||||||||||||| ||||||||||| || || ||||| ||||| |||||||| |||||    
T  52819227 tacaagtcaccacctccacctgtccattattattctccaccatactactataagtcaccacctcc 52819163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 402
Target Start/End: Complemental strand, 52819665 - 52819604
Alignment:
Q  341 tactactacaaatcacctccaccacccgcaccggtttacaagtacaactcaccacctccacc 402  Q
    ||||||||||| |||||||| || ||  ||||  ||||||||||||| ||||||||||||||    
T  52819665 tactactacaagtcacctcctcctccaacaccaatttacaagtacaattcaccacctccacc 52819604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 372
Target Start/End: Original strand, 11879623 - 11879659
Alignment:
Q  336 ctccttactactacaaatcacctccaccacccgcacc 372  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  11879623 ctccttactactacaaatctcctccaccaccctcacc 11879659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 11882475 - 11882511
Alignment:
Q  330 caccaactccttactactacaaatcacctccaccacc 366  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  11882475 caccacctccttactattacaaatcacctccaccacc 11882511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 11891709 - 11891745
Alignment:
Q  330 caccaactccttactactacaaatcacctccaccacc 366  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  11891709 caccacctccttactattacaaatcacctccaccacc 11891745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 366
Target Start/End: Complemental strand, 52818668 - 52818632
Alignment:
Q  330 caccaactccttactactacaaatcacctccaccacc 366  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  52818668 caccacctccctactactacaaatcacctccaccacc 52818632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 366
Target Start/End: Complemental strand, 52818860 - 52818824
Alignment:
Q  330 caccaactccttactactacaaatcacctccaccacc 366  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  52818860 caccacctccttattactacaaatcacctccaccacc 52818824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 52819749 - 52819697
Alignment:
Q  257 tcaccacctccacccgtccattattactcacctccatattactacaagtcacc 309  Q
    |||||||||||||| |||||| | || || ||||||||||| |||||||||||    
T  52819749 tcaccacctccacctgtccatcaatattctcctccatattattacaagtcacc 52819697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University