View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20822_low_9 (Length: 435)
Name: NF20822_low_9
Description: NF20822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20822_low_9 |
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| [»] scaffold1333 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 116; Significance: 7e-59; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 6212597 - 6212478
Alignment:
| Q |
1 |
aaacaactttacaagtctcaagtatccacttacaagataactttgttctatagaagggtttcaaacgtattaaaccgcaaaagcgcgtcatcttttatat |
100 |
Q |
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| T |
6212597 |
aaacaactttacaagtctcaagtatccacttacaagataactttgttctatagaagggtttaaaacgtattaaaccgcaaaagcgcgtcatcttttatat |
6212498 |
T |
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| Q |
101 |
gtaataaaaatgagtctcta |
120 |
Q |
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|||||||||||||||||||| |
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| T |
6212497 |
gtaataaaaatgagtctcta |
6212478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 105 - 247
Target Start/End: Original strand, 6241535 - 6241677
Alignment:
| Q |
105 |
taaaaatgagtctctatcacaggcaaaactatcacctaagaaatttacnnnnnnnaaggagcacctaagaattttactttcaaagctatcttctaaaaac |
204 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6241535 |
taaaaattagtctctatcacaggcaaaactatcacctaagaaatttactttttttaaggagcacctaagaattttactttcaaagctatcttcaaaaaac |
6241634 |
T |
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| Q |
205 |
aggtgataagataattataatgttaaagtcattcaattttatt |
247 |
Q |
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| T |
6241635 |
aggtgataagataattataatgttaaagtcattcatttttatt |
6241677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 105 - 247
Target Start/End: Original strand, 6212608 - 6212750
Alignment:
| Q |
105 |
taaaaatgagtctctatcacaggcaaaactatcacctaagaaatttacnnnnnnnaaggagcacctaagaattttactttcaaagctatcttctaaaaac |
204 |
Q |
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||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6212608 |
taaaaattagtctttatcacaggcaaaactatcacctaagaaatttactttttttaaggagcacctaagaattttactttcaaagctatcttcaaaaaac |
6212707 |
T |
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| Q |
205 |
aggtgataagataattataatgttaaagtcattcaattttatt |
247 |
Q |
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| T |
6212708 |
aggtgataagataattataatgttaaagtcattcatttttatt |
6212750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 160 - 273
Target Start/End: Original strand, 6241687 - 6241800
Alignment:
| Q |
160 |
aaggagcacctaagaattttactttcaaagctatcttctaaaaacaggtgataagataattataatgttaaagtcattcaattttatttgcaaaatggaa |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6241687 |
aaggagcacctaagaattttactttcaaagctatcttcaaaaaacaggtgataagataattataatgttaaagtcattcatttttatttgcaaaatggaa |
6241786 |
T |
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| Q |
260 |
atattaaaccgata |
273 |
Q |
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|||||||||||||| |
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| T |
6241787 |
atattaaaccgata |
6241800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 6241524 - 6241415
Alignment:
| Q |
1 |
aaacaactttacaagtctcaagtatccacttacaagataactttgttctatagaagggtttcaaacgtattaaaccgcaaaagcgcgtcatcttttatat |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6241524 |
aaacaactttacaagtctcaagtatccacttacaagataactttgttcaatagaagggtttcaaacgtattaaaccgcaaaagcgcgtcatc-tttatat |
6241426 |
T |
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| Q |
101 |
gtaataaaaat |
111 |
Q |
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||||||||||| |
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| T |
6241425 |
gtaataaaaat |
6241415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 418
Target Start/End: Original strand, 8368659 - 8368741
Alignment:
| Q |
336 |
gggattgcttgagctactgccttgattaaagtttccttcccggcacgagaaagacatttttccttccatcccttgatattctt |
418 |
Q |
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||||| || ||||| ||||| |||||||||||||| ||||| ||||| || |||||||| || ||||| || ||||| ||||| |
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| T |
8368659 |
gggatagcctgagcaactgctttgattaaagtttctttcccagcacgggagagacatttctctttccagcctttgatcttctt |
8368741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1333 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1333
Description:
Target: scaffold1333; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 250 - 201
Alignment:
| Q |
52 |
agaagggtttcaaacgtattaaaccgcaaaagcgcgtcatcttttatatg |
101 |
Q |
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|||| |||||| ||||||||||||| ||||||| ||||||||||||||| |
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| T |
250 |
agaatggtttcgaacgtattaaaccccaaaagcatgtcatcttttatatg |
201 |
T |
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