View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20823_high_2 (Length: 531)
Name: NF20823_high_2
Description: NF20823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20823_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 15 - 516
Target Start/End: Complemental strand, 44884509 - 44884008
Alignment:
| Q |
15 |
gtatcgtcgccgttgaccgtcactcttccttatcacacctcttttctcacctctctcgcactctccttcatggaagaagacctttcactctcaagtacca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44884509 |
gtatcgtcgccgttgaccgtcactcttccttatcacacctcttttctcacctctctcgcactctccttcatggaagaagacctttcactctcaagtacca |
44884410 |
T |
|
| Q |
115 |
tcttcccaatgaagaccttgacaacctcatcactgtttccactgatgaagacctccagaatatgatagatgagtatgatcgtttgtcttcaaacccttct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44884409 |
tcttcccaatgaagaccttgacaacctcatcactgtttccactgatgaagacctccagaatatgatagatgagtatgatcgtttgtcttcaaacccttct |
44884310 |
T |
|
| Q |
215 |
ccttcaccttctcgactcagattgttcctcttcttctcaaaaccagatactgctgtttccatgggaaatggtcacttttataatcatgcgtggtttgtgg |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44884309 |
ccttcaccttctcgactcagattgttcctcttcttctcaaaaccagatactgctgtttccatgggaaatggtcacttttataatcatgcatggtttgtgg |
44884210 |
T |
|
| Q |
315 |
aagctctcaacaactcagggattctgtctcgtgttgtttcggattctgcagctgctgttgataactgcctcctcaacctcgatgattatgatattaatgc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44884209 |
aagctctcaacaactcagggattctgtctcgtgttgtttcagattctgcagctgctgttgataactgcctcctcaacctcgatgattatgatattagtgc |
44884110 |
T |
|
| Q |
415 |
ttcaagtaatgacgaaaatactaataataatgttatcaaggagcatttgattgatgttgattattcagtgcctgtggaggaggaggaggagaagaacatg |
514 |
Q |
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| T |
44884109 |
ttcaagtaatgacgaaaatactaataataatgttatcaaggagcatttgattgatgttgattattcagtgcctgtggaggaggaggaggagaagaacatg |
44884010 |
T |
|
| Q |
515 |
tt |
516 |
Q |
| |
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|| |
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| T |
44884009 |
tt |
44884008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 7e-75; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 232 - 492
Target Start/End: Original strand, 8994206 - 8994463
Alignment:
| Q |
232 |
cagattgttcctcttcttctcaaaaccagatactgctgtttccatgggaaatggtcacttttataatcatgcgtggtttgtggaagctctcaacaactca |
331 |
Q |
| |
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|||||||||||| |||||||||||||||||||||| |||||||||||| |||| ||||||| ||||||||| |||||||||||||||||| ||||| ||| |
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| T |
8994206 |
cagattgttcctattcttctcaaaaccagatactgatgtttccatgggtaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaaatca |
8994305 |
T |
|
| Q |
332 |
gggattctgtctcgtgttgtttcggattctgcagctgctgttgataactgcctcctcaacctcgatgattatgatattaatgcttcaagtaatgacgaaa |
431 |
Q |
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|||||||| |||||||||||||| | |||||| || | ||| |||||||||||||||||||| |||||||||||| ||| |||||||| ||||| |||| |
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| T |
8994306 |
gggattctctctcgtgttgtttctgtttctgctgcggttgtggataactgcctcctcaaccttgatgattatgatgttagtgcttcaatcaatgatgaaa |
8994405 |
T |
|
| Q |
432 |
atactaataataatgttatcaaggagcatttgattgatgttgattattcagtgcctgtgga |
492 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||||||||| |||||||| | |||||| |
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| T |
8994406 |
atac---taataatgttaaaaaggagcatttgattgatgttgactattcagttcttgtgga |
8994463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 232 - 492
Target Start/End: Original strand, 9028863 - 9029120
Alignment:
| Q |
232 |
cagattgttcctcttcttctcaaaaccagatactgctgtttccatgggaaatggtcacttttataatcatgcgtggtttgtggaagctctcaacaactca |
331 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||||| |||| ||||||| ||||||||| |||||||||||||||||| ||||| ||| |
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| T |
9028863 |
cagattgttcctattcttctcaaaaccagatactgatgtttccatgggtaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaaatca |
9028962 |
T |
|
| Q |
332 |
gggattctgtctcgtgttgtttcggattctgcagctgctgttgataactgcctcctcaacctcgatgattatgatattaatgcttcaagtaatgacgaaa |
431 |
Q |
| |
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|||||||| |||||||||||||| | |||||| || | ||| |||||||||||||||||||| |||||||||||| ||| |||||||| ||||| |||| |
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| T |
9028963 |
gggattctctctcgtgttgtttctgtttctgctgcggttgtggataactgcctcctcaaccttgatgattatgatgttagtgcttcaatcaatgatgaaa |
9029062 |
T |
|
| Q |
432 |
atactaataataatgttatcaaggagcatttgattgatgttgattattcagtgcctgtgga |
492 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||||||||| |||||||| | |||||| |
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| T |
9029063 |
atac---taataatgttaaaaaggagcatttgattgatgttgactattcagttcttgtgga |
9029120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 193 - 274
Target Start/End: Original strand, 9019385 - 9019466
Alignment:
| Q |
193 |
tcgtttgtcttcaaacccttctccttcaccttctcgactcagattgttcctcttcttctcaaaaccagatactgctgtttcc |
274 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||||| | ||| |||||||||||||||||||| ||||| |
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| T |
9019385 |
tcgtttgtcttcaaacccgtctccttccccttctcgactcagattgttcatgttcatctcaaaaccagatactgctatttcc |
9019466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 439 - 492
Target Start/End: Original strand, 9007176 - 9007229
Alignment:
| Q |
439 |
taataatgttatcaaggagcatttgattgatgttgattattcagtgcctgtgga |
492 |
Q |
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||||||||||| ||||||||||||||||||||||| |||||||| | |||||| |
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| T |
9007176 |
taataatgttaaaaaggagcatttgattgatgttgactattcagttcttgtgga |
9007229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 30769868 - 30769922
Alignment:
| Q |
90 |
gaagacctttcactctcaagtaccatcttcccaatgaagaccttgacaacctcat |
144 |
Q |
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||||||| || |||||||||||||| ||||| |||||||||||||| |||||||| |
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| T |
30769868 |
gaagaccctttactctcaagtaccagcttccaaatgaagaccttgataacctcat |
30769922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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