View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20823_high_3 (Length: 428)
Name: NF20823_high_3
Description: NF20823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20823_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 5273132 - 5272714
Alignment:
| Q |
1 |
atggaaccttttgatcttcacaccaagcatgagatgcaaatgcagctcaaaaggaaacttgatgtgatagaagtggaggttcccgttgaagaaaaaatta |
100 |
Q |
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| T |
5273132 |
atggaaccttttgatcttcacaccaagcatgagatgcaaatgaagctcaaaaggaaacttgatgtgatagaagtggaggttcccgttgaagaaaaaatta |
5273033 |
T |
|
| Q |
101 |
acaacaatccgaagaaaaaacctcgtgtttcgaaagatgtaagttttattttgtacctaatcttactataaaaagttgaaatagcaacataataaatgcg |
200 |
Q |
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| T |
5273032 |
acaacaatccgaagaaaaaacctcgtgtttcgaatgatgtaagttttattttgtacctaatcttaatataaaaaattgaaatagcaacataataaatgcg |
5272933 |
T |
|
| Q |
201 |
aaatccatctctaattcc-------agtgttagagatgccggatatggtgatcaattttattttttctgtcgctaattttcatcataatttcaattatct |
293 |
Q |
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| T |
5272932 |
aaatccatctctaattccatccttgagtgttagagatgccggatatggtgatcaattttattttttctgtcgttaattttcatcgtaatttcaattatct |
5272833 |
T |
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| Q |
294 |
agggccaaggatgcatgaaaaatgcaaggtcaaagaagaaccagaaagttattgttagccatgaagaggagatgacagaagagattaatagaggatcaaa |
393 |
Q |
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| T |
5272832 |
agggccaaggatgcatgaaaaatgcaaggtcaaagaagaaccacaaagttattgctagccatgaagaggagatgacagaagagattaatagaggatcaaa |
5272733 |
T |
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| Q |
394 |
tggaaatagttctagtagt |
412 |
Q |
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| T |
5272732 |
tggaaatagttctagtagt |
5272714 |
T |
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