View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20823_high_4 (Length: 409)
Name: NF20823_high_4
Description: NF20823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20823_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 12 - 393
Target Start/End: Complemental strand, 39016140 - 39015759
Alignment:
| Q |
12 |
catcatcacaggttgaaatagcttcctttgattcaacaccaacatgggtttcaagtgttgctnnnnnnnncaaacctggaagcccaaatttcaacaaaaa |
111 |
Q |
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| T |
39016140 |
catcatcacaggttgaaatagcttcctttgattcaacaccaacatgggtttcaagtgttgctaaaaaaaacaaacctggaagcctaaatttcaacaaaaa |
39016041 |
T |
|
| Q |
112 |
atttcctaatgtatttggagacaaaaatgattcttctttgtctgcattggtgagtccaaggcactcaaagatcattgatcgatgggccgcaagacaagct |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39016040 |
atttcctaatgtatttggagacaaaaatgattcttctttgtctgcattggtgagtccaaggcactcaaagatcattgatcgatgggccgcaagacaagct |
39015941 |
T |
|
| Q |
212 |
caagaagtggcaaaaaatcttgnnnnnnntaatgagaatgttgttgttaagaggtttgataattttccttcaaggtcatcaagtttcaattctaggagag |
311 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39015940 |
caagaagtggcaaaaaatcttgaaaaaaataatgagaatgttgttgttaagaggtttgataattttccttcaaggtcatcaagtttcaattctaggagag |
39015841 |
T |
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| Q |
312 |
gttctgtttcacctcctcgttctgacggatcatctgaaagcgaaaaaacattcaacattggtgcttcttctcttgttcaaat |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39015840 |
gttctgtttcacctcctcgttctgacggatcatctgaaagcgaaaaaacattcaacattggtgcttcttctcttgttcaaat |
39015759 |
T |
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