View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20823_low_1 (Length: 549)

Name: NF20823_low_1
Description: NF20823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20823_low_1
NF20823_low_1
[»] chr5 (2 HSPs)
chr5 (90-345)||(14354618-14354867)
chr5 (477-533)||(14354563-14354619)
[»] chr8 (1 HSPs)
chr8 (19-48)||(18916001-18916030)
[»] chr2 (2 HSPs)
chr2 (19-48)||(15805612-15805641)
chr2 (19-48)||(32597676-32597705)
[»] chr1 (1 HSPs)
chr1 (152-228)||(52814680-52814756)


Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 90 - 345
Target Start/End: Complemental strand, 14354867 - 14354618
Alignment:
Q  90 tacatgtgattggctatttatcatcattagtggggtgatatgagacttagttacaaaacctgatctgcaatttgctttttaactcacaaaacaacactca 189  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14354867 tacatgtgattggctatttatcatcattagtggggtgatatga--cttagttacaaaacctaatctgcaatttgctttttaactcacaaaacaacactca 14354770  T
Q  190 taaaatttcccgaacaatatttcgctacatatagcattgttgatacatacattatttagtagttatggaatgttttgattaatgcataaccgcaacctat 289  Q
    | |||||||| ||||||||||| |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||| || ||||    
T  14354769 tgaaatttccagaacaatattttgctacatatagcattgttgatacat----tatttagtagttatggaatgttttgattaatgcataaccgtaatctat 14354674  T
Q  290 aacacgacattcgtaacagtcaaaatcgtaaaatcatacatatatgtgacaacgat 345  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||    
T  14354673 aacacgacattcgtaacagtcaaaatcgtgaaatcctacatatatgcgacaacgat 14354618  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 477 - 533
Target Start/End: Complemental strand, 14354619 - 14354563
Alignment:
Q  477 attattatatataacaaatacatataacaaatggccaacacaacacaatgtctttat 533  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14354619 attattatatataacaaatacatataacaaatggccaacacaacacaatgtctttat 14354563  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 18916030 - 18916001
Alignment:
Q  19 tagccatgtattcccggaaatgtcattctt 48  Q
    ||||||||||||||||||||||||||||||    
T  18916030 tagccatgtattcccggaaatgtcattctt 18916001  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 15805641 - 15805612
Alignment:
Q  19 tagccatgtattcccggaaatgtcattctt 48  Q
    ||||||||||||||||||||||||||||||    
T  15805641 tagccatgtattcccggaaatgtcattctt 15805612  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 32597676 - 32597705
Alignment:
Q  19 tagccatgtattcccggaaatgtcattctt 48  Q
    ||||||||||||||||||||||||||||||    
T  32597676 tagccatgtattcccggaaatgtcattctt 32597705  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 52814756 - 52814680
Alignment:
Q  152 atctgcaatttgctttttaactcacaaaacaacactcataaaatttcccgaacaatatttcgctacatatagcattg 228  Q
    ||||||| ||| |||||||||| | |||||||||||| |  | ||||| ||| |||| || ||||||||||||||||    
T  52814756 atctgcagtttactttttaactaaaaaaacaacactcgtgtagtttcctgaaaaataatttgctacatatagcattg 52814680  T

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