View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20823_low_5 (Length: 374)
Name: NF20823_low_5
Description: NF20823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20823_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 41962491 - 41962851
Alignment:
| Q |
1 |
ctcaccttcctcggcgattcatctctaaccaccaacggcgtcgtttccttaactcaacccaccactttctccaccggtgctatcatctacaaacacccca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41962491 |
ctcaccttcctcggcgattcatctctaaccaccaacggcgtcgtttccttaactcagcccaccactttctccaccggtgctatcatctacaaacacccca |
41962590 |
T |
|
| Q |
101 |
tttctctctttgacatttcaacaaacaccacgtcttcattctcaacaacgttctctttctctattacaaattcaaatcccacttcctttggtgatggcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41962591 |
tttctctctttgacatttcaacaaacaccacgtcttcattctcaacaacgttctctttctctattacaaattcaaatcccacttcctttggtgatggcat |
41962690 |
T |
|
| Q |
201 |
tgctttcttcctttcccccaacaatctctcatcaacatcgtcaccaagcccatttggtcttcctacaaattttattgccgttgaattcgatacgcgattc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41962691 |
tgctttcttcctttcccccaacaatctctcatcaacatcgtcaccaagcccatttggtcttcctacaaattttattgctgttgaattcgatacgcgattc |
41962790 |
T |
|
| Q |
301 |
aacccacatttcaatgacccaaatgaaaatcatataggttttgatattgatacattgaact |
361 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41962791 |
aacccacatttcaatgacccaaatgaaaatcatataggttttgatattgatacattgaact |
41962851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 1223965 - 1224325
Alignment:
| Q |
1 |
ctcaccttcctcggcgattcatctctaaccaccaacggcgtcgtttccttaactcaacccaccactttctccaccggtgctatcatctacaaacacccca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1223965 |
ctcaccttcctcggcgattcatctctaaccaccaacggcgtcgtttccttaactcaacccaccactttctccaccggtgctatcatctacaaacacccca |
1224064 |
T |
|
| Q |
101 |
tttctctctttgacatttcaacaaacaccacgtcttcattctcaacaacgttctctttctctattacaaattcaaatcccacttcctttggtgatggcat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1224065 |
tttctctctttgacatttcaacaaacaccacgtcttcattctcaacaacgttctctttctctattacaaattcaaatcccacttcctttggtgatggcat |
1224164 |
T |
|
| Q |
201 |
tgctttcttcctttcccccaacaatctctcatcaacatcgtcaccaagcccatttggtcttcctacaaattttattgccgttgaattcgatacgcgattc |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1224165 |
tgttttcttcctttcccccaacaatctctcatcaacatcgtcaccaagcccatttggtcttcctacaaattttattgctgttgaattcgatacgcgattc |
1224264 |
T |
|
| Q |
301 |
aacccacatttcaatgacccaaatgaaaatcatataggttttgatattgatacattgaact |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1224265 |
aacccacatttcaatgacccaaatgaaaatcatataggttttgatattgatacattgaact |
1224325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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