View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20824_high_16 (Length: 331)
Name: NF20824_high_16
Description: NF20824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20824_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 26 - 320
Target Start/End: Complemental strand, 17450777 - 17450483
Alignment:
| Q |
26 |
atcaaacggtggagctgaaatgttagtacttttattaaatgaaaaaactggttgtttagccgtttgacaggcactacaatcaaaagactcattagttact |
125 |
Q |
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||||||||||| ||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
17450777 |
atcaaacggtgaagctgaaatattagtacttttattaaatgacaaagctggttgtttagccgtttgacaggcagtacaatcaaaagactcattagttact |
17450678 |
T |
|
| Q |
126 |
gatcctaaatgaccttgagacactagaggacgcaattttccaatagagctatgagcaagacgttgatgccaaagctggatggaggaatctgtggaagcag |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17450677 |
gatcctaaatgaccttgagacactagaggacgcaattttccaatagagctatgagcaagacgttgatgccaaagctggatggaggaatctgtggaagcag |
17450578 |
T |
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| Q |
226 |
cacaaatatttttggagacacgaggaacatgtagttgagtgagctcaaataaccttccgatcttacatccagtccctatgagttgtcccgtctgt |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17450577 |
cacaaatatttttggagacacgaggaacatgtagttgagtgagctcaaataaccttccgatcttacatccagtccctatgagttgtcccgtctgt |
17450483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 59 - 322
Target Start/End: Complemental strand, 14825471 - 14825211
Alignment:
| Q |
59 |
attaaatgaaaaaactggttgtttagccgtttgacaggcactacaatcaaaagactcattagttactgatcctaaatgaccttgagacactagaggacgc |
158 |
Q |
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||||||||| ||| |||||||||||| |||||||| | | |||||| |||||||||||| || || |||||||||||||||||||||| || ||| || |
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| T |
14825471 |
attaaatgataaagctggttgtttagtagtttgacaaggagtacaattaaaagactcatttgtaacagatcctaaatgaccttgagacataaggggaagc |
14825372 |
T |
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| Q |
159 |
aattttccaatagagctatgagcaagacgttgatgccaaagctggatggaggaatctgtggaagcagcacaaatatttttggagacacgaggaacatgta |
258 |
Q |
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| T |
14825371 |
atttttccaaaagaactataagcaagacgaccatgccaaagttgaatggaagaatctttggaagcggcacatata---ttgggctcttgaggaacatgca |
14825275 |
T |
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| Q |
259 |
gttgagtgagctcaaataaccttccgatcttacatccagtccctatgagttgtcccgtctgtgg |
322 |
Q |
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|| |||||| | ||| | |||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
14825274 |
atttagtgagttgaaacagccttccgatcttacatccagtccctacgagctgtcccgtctgtgg |
14825211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 26 - 320
Target Start/End: Complemental strand, 24431728 - 24431434
Alignment:
| Q |
26 |
atcaaacggtggagctgaaatgttagtacttttattaaatgaaaaaactggttgtttagccgtttgacaggcactacaatcaaaagactcattagttact |
125 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24431728 |
atcaaacggtgaagctgaaatattagtacttttattaaatgacaaagctggttgtttagccgtttgacaggcagtacaatcaaaagactcattagttact |
24431629 |
T |
|
| Q |
126 |
gatcctaaatgaccttgagacactagaggacgcaattttccaatagagctatgagcaagacgttgatgccaaagctggatggaggaatctgtggaagcag |
225 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24431628 |
gatcctaaatgaccttgaaacactagaggacgcaattttccaatagagctatgagcaagacgttgatgccaaagctggatggaggaatctgtggaagcag |
24431529 |
T |
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| Q |
226 |
cacaaatatttttggagacacgaggaacatgtagttgagtgagctcaaataaccttccgatcttacatccagtccctatgagttgtcccgtctgt |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24431528 |
cacaaatatttttggagacacgaggaacatgtagttgagtgagctcaaataaccttccgatcttacatccagtccctatgagttgtcccgtctgt |
24431434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 312
Target Start/End: Complemental strand, 16502624 - 16502341
Alignment:
| Q |
26 |
atcaaacggtggagctgaaatgttagtacttttattaaatgaaaaaactggttgtttagccgtttgacaggcactacaatcaaaagactcattagttact |
125 |
Q |
| |
|
|||||| |||| | |||||||| |||||||||||| || || || |||||||||||| |||| ||| |||||||||| |||||||||| | | || |
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| T |
16502624 |
atcaaatggtgaaactgaaatggaagtacttttattgaaagacaaggctggttgtttagaagtttcacaagcactacaattaaaagactcactggcgaca |
16502525 |
T |
|
| Q |
126 |
gatcctaaatgaccttgagacactagaggacgcaattttccaatagagctatgagcaagacgttgatgccaaagctggatggaggaatctgtggaagcag |
225 |
Q |
| |
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||||||| || ||||||||||||||||| |||||| || ||||| || ||||||| |||| ||||||| || || || || |||| ||||||||| | |
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| T |
16502524 |
gatcctagataaccttgagacactagagaacgcaacttaccaattgaattatgagctggacgacgatgccagagttgaattgacgaatgtgtggaagctg |
16502425 |
T |
|
| Q |
226 |
cacaaatatttttggagacacgaggaacatgtagttgagtgagctcaaataaccttccgatcttacatccagtccctatgagttgtc |
312 |
Q |
| |
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||||||| ||| | || |||||| ||| |||| |||||||||| ||||||| |||||||||| | ||||||||||||||||| |
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| T |
16502424 |
cacaaatgttt---aactcatgaggaatatgcagttcagtgagctcatataacctcccgatcttacgccaagtccctatgagttgtc |
16502341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 26 - 186
Target Start/End: Complemental strand, 29990584 - 29990424
Alignment:
| Q |
26 |
atcaaacggtggagctgaaatgttagtacttttattaaatgaaaaaactggttgtttagccgtttgacaggcactacaatcaaaagactcattagttact |
125 |
Q |
| |
|
||||||||||| |||||||||| |||| ||||| ||| || ||| | ||||||||||| ||||||| ||| ||||||||||||||||| | || || |
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| T |
29990584 |
atcaaacggtgaagctgaaatggatgtacatttatgaaaagataaagcaggttgtttagcactttgacaagcagtacaatcaaaagactcactggtgaca |
29990485 |
T |
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| Q |
126 |
gatcctaaatgaccttgagacactagaggacgcaattttccaatagagctatgagcaagac |
186 |
Q |
| |
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|||||||||| ||||||||||| ||||||||| ||||| ||||| || ||||||||||| |
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| T |
29990484 |
gatcctaaataaccttgagacattagaggacgtaatttaccaattgaatcatgagcaagac |
29990424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 312
Target Start/End: Original strand, 53017589 - 53017872
Alignment:
| Q |
26 |
atcaaacggtggagctgaaatgttagtacttttattaaatgaaaaaactggttgtttagccgtttgacaggcactacaatcaaaagactcattagttact |
125 |
Q |
| |
|
|||||| |||| | |||||||| |||||||| || || || || ||| |||||||||| ||| ||| ||| ||||||||||||||||||| | || |
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| T |
53017589 |
atcaaatggtgaaactgaaatggaagtactttaatcgaaagacaagactagttgtttagcaatttaacaagcagtacaatcaaaagactcattggcgaca |
53017688 |
T |
|
| Q |
126 |
gatcctaaatgaccttgagacactagaggacgcaattttccaatagagctatgagcaagacgttgatgccaaagctggatggaggaatctgtggaagcag |
225 |
Q |
| |
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||||||||| |||| ||||||||||||||||||| || ||||| || ||||| | ||||| ||||||||||| | |||| |||| ||||||||| | |
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| T |
53017689 |
tatcctaaataacctcgagacactagaggacgcaacttaccaattgaactatgtactagacgatgatgccaaagttcaatgggcgaatgtgtggaagctg |
53017788 |
T |
|
| Q |
226 |
cacaaatatttttggagacacgaggaacatgtagttgagtgagctcaaataaccttccgatcttacatccagtccctatgagttgtc |
312 |
Q |
| |
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||||||| ||| || || |||||| ||| |||| |||||||||| ||||||||| |||||||| ||||||||||||||||||| |
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| T |
53017789 |
cacaaatgttt---gactcatgaggaatatgcagttcagtgagctcatataaccttctgatcttacgcccagtccctatgagttgtc |
53017872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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