View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20824_high_17 (Length: 330)
Name: NF20824_high_17
Description: NF20824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20824_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 29 - 326
Target Start/End: Complemental strand, 40411810 - 40411513
Alignment:
| Q |
29 |
acaagatttttattcttagttatagatggcgcagagactctaaattcctcagcagatattcgatgtgcttcaaacacttcagcagcagcgataaaaccca |
128 |
Q |
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| T |
40411810 |
acaagatttttattcttagttatagatggcgcagagactctaaattcctcagcagatattcgatgtgcttcaaacacttcagcagcagcgataaaaccca |
40411711 |
T |
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| Q |
129 |
tacccgccttaagttcgtgaccacaaagtgagatatcaaattctgcaaaatttaataagaaaatcaaataaacaattggcttaatcaaataattgttgta |
228 |
Q |
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| T |
40411710 |
tacccgccttaagttcgtgaccacaaagtgagatatcaaattctgcaaaatttaataagaaaatcaaataaacaattggcttaatcaaacaattgttgta |
40411611 |
T |
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| Q |
229 |
gaataaaagataaaataatttgaagcacaattcttagtccttactcaaaccaaaatgactttgatccccctcattggaagttgctgtctgtggtgctg |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40411610 |
gaataaaagataaaataatttgaagcacaattcttagtccttactcaaaccaaaatgactttgatccccctcattggaagttgctgtctgaggtgctg |
40411513 |
T |
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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 162
Target Start/End: Complemental strand, 29036668 - 29036580
Alignment:
| Q |
74 |
tcctcagcagatattcgatgtgcttcaaacacttcagcagcagcgataaaacccatacccgccttaagttcgtgaccacaaagtgagat |
162 |
Q |
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||||| || ||||||||||| |||||||||||| |||||||||| | ||||||||||| ||||||||||| |||||||| || ||||| |
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| T |
29036668 |
tcctctgccgatattcgatgggcttcaaacactccagcagcagctaccaaacccatacctgccttaagttcatgaccacagagggagat |
29036580 |
T |
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