View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20824_high_21 (Length: 326)
Name: NF20824_high_21
Description: NF20824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20824_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 31 - 300
Target Start/End: Complemental strand, 38462706 - 38462437
Alignment:
| Q |
31 |
ataaacatgttatatgaccaaaataaaacgaaatttattgataaaacataacaaattgtggcaattaaacacagccctgcattactaaaggagaccatag |
130 |
Q |
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| T |
38462706 |
ataaacatgttatatgaccaaaataaaacgaaatatattgataaaacataacaaattgtggcaattaaacacagccctgcattactaaaggagaccatag |
38462607 |
T |
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| Q |
131 |
aattctagctcattacgtattcatcattccaaactctaagtttgatttaataccataaccatgattttatcccacacgtagcatattactactcttacta |
230 |
Q |
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| T |
38462606 |
aattctagctcattacgtattcatcattccaaactctaagtttgatttaataccataaccatgattttatcccacacgtagcatattactactcttacta |
38462507 |
T |
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| Q |
231 |
cataacttttaacttaaagccaccataataaaaagataggacagaaaaagaaataaacatcaaaacatga |
300 |
Q |
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| T |
38462506 |
cataacttttaacttaaagccaccataataaaaagataggacagaaaaagaaataaacatcaaaacatga |
38462437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 33 - 282
Target Start/End: Original strand, 52091272 - 52091519
Alignment:
| Q |
33 |
aaacatgttatatgaccaaaataaaacgaaatttattgataaaacataacaaattgtggcaattaaacacagccctgcattactaaaggagaccatagaa |
132 |
Q |
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| T |
52091272 |
aaacatgttatatgactaaaacaaaaagaaatatgttgataaaatacaacaaattgtgtcaatgacacacaacactgcattactagaggagagcatacaa |
52091371 |
T |
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| Q |
133 |
ttctagctcattacgta----ttcatcattccaaactctaagtttgatttaataccataaccatgattttatcccacacgtagcatattactactcttac |
228 |
Q |
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| T |
52091372 |
ttccaactcattacctacctattcaccattccaaa-----agtttgatttaataccataatcatgattttatcccgcacatagcatattactactcttaa |
52091466 |
T |
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| Q |
229 |
tacataacttttaacttaaagccaccataataaaaagataggacagaaaaagaa |
282 |
Q |
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| T |
52091467 |
taaataac-tttaacttaaagccaccataatatgaagataggacagaaaaagaa |
52091519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 52 - 279
Target Start/End: Complemental strand, 48754385 - 48754162
Alignment:
| Q |
52 |
aataaaacgaaatttattgataaaacataacaaattgtggcaattaaacacagccctgcattactaaaggagaccatagaattctagctcattacgtatt |
151 |
Q |
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||||||| ||||| | ||||||||||| |||||||||||||||| | || | | ||||||| |||||||||| |||| ||||| | |||||||| |||| |
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| T |
48754385 |
aataaaaagaaatatgttgataaaacacaacaaattgtggcaatgacacgcgacactgcattgctaaaggagagcatacaattccaactcattacctatt |
48754286 |
T |
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| Q |
152 |
catcattccaaactctaagtttgatttaataccataaccatgattttatcccacacgtagcatattac--tactcttactacataacttttaacttaaag |
249 |
Q |
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| T |
48754285 |
caccattccaaa-----agtttgatttaataccatagtcctgattttatcccacacatagcatattacaacactcttaataaataac-tttaacttaaag |
48754192 |
T |
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| Q |
250 |
ccaccataataaaaagataggacagaaaaa |
279 |
Q |
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||||||||||| ||||||||||||||||| |
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| T |
48754191 |
ccaccataatatgaagataggacagaaaaa |
48754162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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