View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20824_high_22 (Length: 326)
Name: NF20824_high_22
Description: NF20824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20824_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 21 - 318
Target Start/End: Original strand, 31733101 - 31733398
Alignment:
| Q |
21 |
acatcatcatattaaaaacgtgacactacaagtgtgaggcaactgtatttattctacccattccttttgttttgtactgtgctctgtggttttgcttatt |
120 |
Q |
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| T |
31733101 |
acatcttcatattaaaaacgtgacactacaagtgtgaggcaactgtatttattctacccattccttttgttttgtactgtgctgtgtggttttgcttatt |
31733200 |
T |
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| Q |
121 |
tggagtttttatatgtggcatttgacctttgtatgacgatatgttatgatcctgaataggagtttcatgaagtttttggggtgtgagtttgagnnnnnnn |
220 |
Q |
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| T |
31733201 |
tggagtttttatttgtggcatttgacctttgtatgacgatatgttatgatcctgaataggagtttcatgaagtttttggggtgtgagttggagttttttt |
31733300 |
T |
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| Q |
221 |
nnnactgaactatgctgtgaaattggtaggatcttatgctatgtgtttagatcccgcgatttgtgatattgtgaccccttctcgatcctgcctatgat |
318 |
Q |
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| T |
31733301 |
ttgactgaactatgctgtgaaattggtaggatcttatgctatgtgttcagatcccgcgatttgtgatattgtgaccccttctcgatcctgcctatgat |
31733398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 34 - 204
Target Start/End: Original strand, 31735793 - 31735962
Alignment:
| Q |
34 |
aaaaacgtgacactacaa-gtgtgaggcaactgtatttattctacccattccttttgttttgtactgtgctctgtggttttgcttatttggagtttttat |
132 |
Q |
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| T |
31735793 |
aaaaacatgacactgcaacgtctgaggcaattgtttttattctactcattccttttgttttgtactc--ctgtgttgttttgcttatttggagtttttag |
31735890 |
T |
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| Q |
133 |
atgtggcatttgacctttgtatgacgatatgttatgatcctgaataggagtttcatgaagtttttggggtgt |
204 |
Q |
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| T |
31735891 |
ttgtggcatttgacctttgtatgactatatgttgtgatcctgaattggagtttcatcaagtttttgtggtgt |
31735962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 317
Target Start/End: Original strand, 31736020 - 31736066
Alignment:
| Q |
271 |
atcccgcgatttgtgatattgtgaccccttctcgatcctgcctatga |
317 |
Q |
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| T |
31736020 |
atcccgtgatttgtgatattgtgatcccttcttggtcctgcctatga |
31736066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 21 - 318
Target Start/End: Original strand, 6498092 - 6498389
Alignment:
| Q |
21 |
acatcatcatattaaaaacgtgacactacaagtgtgaggcaactgtatttattctacccattccttttgttttgtactgtgctctgtggttttgcttatt |
120 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||| |
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| T |
6498092 |
acatcttcatattaaaaacgtgacactacaagtgtgaggcaactgtatttattctacccattccttttgttttgtactctgctgtgttgttttgcttatt |
6498191 |
T |
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| Q |
121 |
tggagtttttatatgtggcatttgacctttgtatgacgatatgttatgatcctgaataggagtttcatgaagtttttggggtgtgagtttgagnnnnnnn |
220 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6498192 |
tggagtttttatttgtggcatttgacctttgtatgacgatatgttatgatcctgaataggagtttcatgaagtttttggggtgtgagttggagttttttt |
6498291 |
T |
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| Q |
221 |
nnnactgaactatgctgtgaaattggtaggatcttatgctatgtgtttagatcccgcgatttgtgatattgtgaccccttctcgatcctgcctatgat |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6498292 |
tttactgaactatgctgtgaaattggtaggatcttatgctatgtgtttagatcccgcgatttgtgatattgtgaccccttcttgatcctgcctatgat |
6498389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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