View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20824_high_23 (Length: 325)
Name: NF20824_high_23
Description: NF20824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20824_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 2368049 - 2368364
Alignment:
| Q |
1 |
aatcaagggtttgtggttcaccttcctccttgacagaaacctcagggtaatagatagccttacaagtataagacctggtagttctagaagaaaccttgag |
100 |
Q |
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| T |
2368049 |
aatcaagggtttgtggttcaccttcctccttgacagaaacctcagggtaatagatagccttacaagtataagacctggtagttctagaagaaaccttgag |
2368148 |
T |
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| Q |
101 |
attgttgagacgaagagcacgaccacccagaaatggtttcttaccaagaagagtgtaggttgagttgctggctatggttatggctct-gtggt-gctgct |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
2368149 |
attgttgagacgaagagcacgaccacccagaaatggtttcttaccaagaagagtgtaggttgagttgctggctatggttatggctctagtggtggctgc- |
2368247 |
T |
|
| Q |
199 |
catggatgcttctgatgatgtttggttcaaacctcaaaagacagtggaagtgtaagtgtaagtgtgaatgtgtatttgtgtgactcttgtttctgatagg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2368248 |
catggatgcttctgatgatgtttggttcaaacctcaaaagacagtggaagtgtaagtgtaagtgtgaatgtgtatttgtgtgactcttgtttctgatagg |
2368347 |
T |
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| Q |
299 |
cttttgattgttctgtg |
315 |
Q |
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||||||||||||||||| |
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| T |
2368348 |
cttttgattgttctgtg |
2368364 |
T |
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