View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20824_high_27 (Length: 316)
Name: NF20824_high_27
Description: NF20824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20824_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 29 - 304
Target Start/End: Complemental strand, 46238729 - 46238454
Alignment:
| Q |
29 |
acaagttcacatcaattaaaaaccctaaaaaattcacaacttctttaacgttttcctccttttcctcgttaacagtaccacaacaagaataaacaaagaa |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46238729 |
acaagttcacatcaattaaaaaccctaaaaaattcacaacatctttaacgttttcctccttttcctcgttaacagtaccacaacaagaataaacaaagaa |
46238630 |
T |
|
| Q |
129 |
atagcatgcatattcataggagtaaagggaggaaagtaaagggattcacataatagacaacttacatcagcaactggagctccaacgtttttcataaccg |
228 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46238629 |
atagcatgcatattcataggagtaaacagaggaaagtaaagggattcacataatagacaacttacatcagcaactggagctccaacgtttttcataaccg |
46238530 |
T |
|
| Q |
229 |
tcgattgtccttcgatcgtttcatgcatcttcttcgcaacttcgttcgtcttctctccttctttccgcgtcacctt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46238529 |
tcgattgtccttcgatcgtttcatgcatcttcttcgcaacttcgttcgtcttctctccttctttccgcgtcacctt |
46238454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 29 - 304
Target Start/End: Original strand, 3455929 - 3456204
Alignment:
| Q |
29 |
acaagttcacatcaattaaaaaccctaaaaaattcacaacttctttaacgttttcctccttttcctcgttaacagtaccacaacaagaataaacaaagaa |
128 |
Q |
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|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455929 |
acaagttcacatcaatttaaaaccctaaaaaattcacaacttctttaacgttttcctccttttcctcgttaacagtaccacaacaagaataaacaaagaa |
3456028 |
T |
|
| Q |
129 |
atagcatgcatattcataggagtaaagggaggaaagtaaagggattcacataatagacaacttacatcagcaactggagctccaacgtttttcataaccg |
228 |
Q |
| |
|
||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3456029 |
atagcatgcatattcttaggagtaaacagaagaaagtaaagggattcacataatagacaacttacatcagcaactggagctccaacgtttttcataaccg |
3456128 |
T |
|
| Q |
229 |
tcgattgtccttcgatcgtttcatgcatcttcttcgcaacttcgttcgtcttctctccttctttccgcgtcacctt |
304 |
Q |
| |
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||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3456129 |
tcgattgcccttcgattgtttcctgcatcttcttcgcaacttcgttcgtcttctctccttctttcggcgtcacctt |
3456204 |
T |
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