View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20824_high_30 (Length: 306)
Name: NF20824_high_30
Description: NF20824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20824_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 14 - 282
Target Start/End: Complemental strand, 6299446 - 6299178
Alignment:
| Q |
14 |
agactgaaaatgaagaccattcatctccaaaatcttcatccccaattttggccatgaatccaaaaagttgccattcagaaaagttagagatcaaagatgt |
113 |
Q |
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| T |
6299446 |
agactgaaaatgaagaccattcatctccaaaatcttcatccccaattttggccatgaatccaaaaagttgccattcagaaaagttagagatcaaagatgt |
6299347 |
T |
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| Q |
114 |
gcagatagactgtcaggctaatgttattaattggtctaagagttatgcatccaagctaagctctttcaatggtaaggagttaaagaaaagtggtacagaa |
213 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6299346 |
gcaggtagactgtcaggctaatgttattaagtggtctaagagttatgcatccaagctaagctctttcaatggtaaagagttaaagaaaagtggtacagaa |
6299247 |
T |
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| Q |
214 |
gcttcaggtttggatattgcagagataacatcggacacttccagttccaagtatgttagatagttgatg |
282 |
Q |
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| T |
6299246 |
gcttcaggtttggatattgcagagacaacatcggacacttccagttccaagtatgttagatagttgatg |
6299178 |
T |
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