View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20824_high_31 (Length: 305)
Name: NF20824_high_31
Description: NF20824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20824_high_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 22 - 293
Target Start/End: Original strand, 52985385 - 52985655
Alignment:
| Q |
22 |
catcatcaacaacttccatcttcaacatttttccctttgtccttcctccttcgtaaacctggagttctctccccatgtgtccttaaactcacttctccct |
121 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52985385 |
catcatcaacaactttcatcttcaacatttttccctttgtccttcctccttcgtaaacctagagttctctccccatgtgtccttaaactcacttctccct |
52985484 |
T |
|
| Q |
122 |
ctcctcatacttctccactattttannnnnnnncatttctgatttcaacttccacaatcaaaaccaaactctcacagtttcaaaattgggaattaggnnn |
221 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
52985485 |
ctcctcatacttctccactgtttt-ttttttttcatttctgatttcaactttcacaatcaaaaccaaactctcacagtttcaaaatatggaattaggttt |
52985583 |
T |
|
| Q |
222 |
nnnnaatttattctttctcacataaacacagattctattgtatctccgccacaccacacttttctacagtat |
293 |
Q |
| |
|
||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
52985584 |
ttttaatttcttctttctcacataaacacaaattctaccgtatctccgccacaccacacttttctacagtat |
52985655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 22 - 206
Target Start/End: Original strand, 12384571 - 12384750
Alignment:
| Q |
22 |
catcatcaacaacttccatcttcaacatttttccctttgtccttcctccttcgtaaacctggagttctctccccatgtgtccttaaactcacttctccct |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
12384571 |
catcatcaacaacttccatcttcaacatttttccctttgttcttcctccttcataaacctggagtcctcaccccatgtgtccttaaactcacttctccct |
12384670 |
T |
|
| Q |
122 |
ctcctcatacttctccactattttannnnnnnncatttctgatttcaacttccacaatcaaaa-ccaaactctcacagtttcaaaa |
206 |
Q |
| |
|
|||||| |||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
12384671 |
ctcctcctacttctccactgtttt------tttcatttctgatttcaacttccacaatcaaaatccaaactctcacaacttcaaaa |
12384750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 22 - 206
Target Start/End: Original strand, 14455304 - 14455484
Alignment:
| Q |
22 |
catcatcaacaacttccatcttcaacatttttccctttgtccttcctccttcgtaaacctggagttctc-tccccatgtgtccttaaactcacttctccc |
120 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
14455304 |
catcatctacaacttccatcttcaacatttttccctttgttcttcctccttcataaacctggagtcctcacccccatgtgtccttaaactcacttctccc |
14455403 |
T |
|
| Q |
121 |
tctcctcatacttctccactattttannnnnnnncatttctgatttcaacttccacaatcaaaa-ccaaactctcacagtttcaaaa |
206 |
Q |
| |
|
||||||| |||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
14455404 |
tctcctcctacttctccactgtttt------tttcatttctgatttcaacttccacaatcaaaatccaaactctcacaacttcaaaa |
14455484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 18704184 - 18704016
Alignment:
| Q |
22 |
catcatcaacaacttccatcttcaacatttttccctttgtccttcctccttcgtaaacctggagttctc-tccccatgtgtccttaaactcacttctccc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
18704184 |
catcatcaacaacttccatcttcaacatttttccctttgttcttcctccttcataaacctggagtcctcacccccatgtgtccttaaactcacttctccc |
18704085 |
T |
|
| Q |
121 |
tctcctcatacttctccactattttannnnnnnncatttctgatttcaacttccacaatcaaaa-ccaaactctc |
194 |
Q |
| |
|
||||||| ||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18704084 |
tctcctccaacttctccactgtttt------tttcatttctgatttcaacttccacaatcaaaatccaaactctc |
18704016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University