View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20824_high_33 (Length: 302)
Name: NF20824_high_33
Description: NF20824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20824_high_33 |
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| [»] scaffold0179 (1 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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| [»] scaffold0894 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 3300702 - 3300432
Alignment:
| Q |
17 |
caaagttaacttagaaaggtaaaa----gaaataacggatgatacgtttatagtattaccgcatgataactgaagtactttgttcgatcaaagtaatcat |
112 |
Q |
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||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3300702 |
caaagttaacttagaaaagtaaaatatttaaataacggatgatacgtttatagtattaccgcatgataactgaagtactttgttcgatcaaagtaattat |
3300603 |
T |
|
| Q |
113 |
acaagtagtattagaacaataacttacacgtcaatgttctttttccaagcaggcaccgatccagtaagaaggtttccagttaaaaatcagatttcagata |
212 |
Q |
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||||||| ||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3300602 |
acaagtaatattagaacaagaacttacacgtcgatgttctttttccaagcaggtaccgatccagtaagaaggtttccagttaaaaatcagatttcagata |
3300503 |
T |
|
| Q |
213 |
gcaattaaatagatatcatgatcctcatgcacataatctggtataacgctgctttaaggtttgatgatgtcc |
284 |
Q |
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||||||||||| || |||| |||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
3300502 |
gcaattaaatatatgtcat-atcctcatgcacataatctggtataacgctgctttacggtttgttgatgtcc |
3300432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 36598754 - 36598684
Alignment:
| Q |
214 |
caattaaatagatatcatgatcctcatgcacataatctggtataacgctgctttaaggtttgatgatgtcc |
284 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
36598754 |
caattaaatatatatcatgatcctcatgcacataatctggtataacgctgctttacggtttgttgatgtcc |
36598684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 38837360 - 38837098
Alignment:
| Q |
17 |
caaagttaacttagaaaggtaaaagaaataacggatgatacgtttatagtattaccgcatgataactgaagtactttgttcgatcaaagtaatcatacaa |
116 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
38837360 |
caaagttaacttagaaaagtaaaataaataacggatgatacgtttacagtattaccgcatgataactgaagtactttgttcgatcaaagtaattatataa |
38837261 |
T |
|
| Q |
117 |
gtagtattagaacaataacttacacgtcaatgttctttttccaagcaggcaccgatccagtaagaaggtttccagttaaaaatcagatttcagatagcaa |
216 |
Q |
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||| ||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38837260 |
gtaatattagaacaagaacttacacgtcgatgttctttttccaagcaggtaccgatccagtaagaaggtttccagttaaaaatcagatttcagatagcaa |
38837161 |
T |
|
| Q |
217 |
ttaaatagatatcatgatcctcatgcacataatctggtataacgctgctttaaggtttgatgatgtcc |
284 |
Q |
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| | ||||||||||||||||| ||||||| |||||||||||||||||| |||||| |||||||| |
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| T |
38837160 |
t-----atatatcatgatcctcatgtacataatttggtataacgctgctttatggtttgttgatgtcc |
38837098 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 31255012 - 31255198
Alignment:
| Q |
14 |
aggcaaagttaacttagaaaggtaaaagaaataacggatgatacgtttatagtattaccgcatgataactgaagtactttgttcgatcaaagtaatcata |
113 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31255012 |
aggcaaagttaacttagaaaggtaaaagaaataacggatgatacgtttatagtattaccacatgataactgaagtactttgttcgatcaaagtaatcata |
31255111 |
T |
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| Q |
114 |
caagtagtattagaacaataacttacacgtcaatgttctttttccaagcaggcaccgatccagtaagaaggtttccagttaaaaatc |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31255112 |
caagtagtattagaacaataacttacacgtcgatgttctttttccaagcaggcaccgatccagtgagaaggtttccagttaaaaatc |
31255198 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 118 - 200
Target Start/End: Original strand, 31292099 - 31292181
Alignment:
| Q |
118 |
tagtattagaacaataacttacacgtcaatgttctttttccaagcaggcaccgatccagtaagaaggtttccagttaaaaatc |
200 |
Q |
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||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31292099 |
tagtagtagaaaaataacttacacgtcaacgttctttttccaagcaggcaccgatccagtgagaaggtttccagttaaaaatc |
31292181 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 200
Target Start/End: Complemental strand, 31419563 - 31419470
Alignment:
| Q |
107 |
aatcatacaagtagtattagaacaataacttacacgtcaatgttctttttccaagcaggcaccgatccagtaagaaggtttccagttaaaaatc |
200 |
Q |
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|||||| | ||||||||||||| |||||| ||||| | ||||||| |||||| |||||| | |||||| ||||||||||| |||||||||| |
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| T |
31419563 |
aatcatgctagtagtattagaaagataactcacacgctcacgttctttctccaagaaggcactggtccagtcagaaggtttccggttaaaaatc |
31419470 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 200
Target Start/End: Original strand, 31374262 - 31374355
Alignment:
| Q |
107 |
aatcatacaagtagtattagaacaataacttacacgtcaatgttctttttccaagcaggcaccgatccagtaagaaggtttccagttaaaaatc |
200 |
Q |
| |
|
||||||| || ||||||| ||| |||||||||||| |||||||||| |||| | ||||||| |||||| || ||||||||||||||||| |
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| T |
31374262 |
aatcatataattagtatttgaaaggtaacttacacgtaaatgttctttctccatgaaggcaccagtccagtgaggttgtttccagttaaaaatc |
31374355 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 25240 - 25170
Alignment:
| Q |
214 |
caattaaatagatatcatgatcctcatgcacataatctggtataacgctgctttaaggtttgatgatgtcc |
284 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||| |
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|
| T |
25240 |
caattaaatatatatcatgatcctcatgcacataatctagtataacgctgctttacggtttgttgatgtcc |
25170 |
T |
|
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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 220 - 284
Target Start/End: Complemental strand, 8650786 - 8650722
Alignment:
| Q |
220 |
aatagatatcatgatcctcatgcacataatctggtataacgctgctttaaggtttgatgatgtcc |
284 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||| |
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|
| T |
8650786 |
aatatatatcatgatcctcatgcacataatctggtacaacgctgctttacggtttgttgatgtcc |
8650722 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 246754 - 246684
Alignment:
| Q |
214 |
caattaaatagatatcatgatcctcatgcacataatctggtataacgctgctttaaggtttgatgatgtcc |
284 |
Q |
| |
|
|||||||||| |||| |||||||| ||||| |||||||||||||||||||||||| |||||| |||||||| |
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| T |
246754 |
caattaaatatatattatgatccttatgcatataatctggtataacgctgctttatggtttgttgatgtcc |
246684 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 37281444 - 37281514
Alignment:
| Q |
214 |
caattaaatagatatcatgatcctcatgcacataatctggtataacgctgctttaaggtttgatgatgtcc |
284 |
Q |
| |
|
|||||||||| |||| |||||||| ||||| |||||||||||||||||||||||| |||||| |||||||| |
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|
| T |
37281444 |
caattaaatatatattatgatccttatgcatataatctggtataacgctgctttatggtttgttgatgtcc |
37281514 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0894 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0894
Description:
Target: scaffold0894; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 284
Target Start/End: Complemental strand, 751 - 692
Alignment:
| Q |
225 |
atatcatgatcctcatgcacataatctggtataacgctgctttaaggtttgatgatgtcc |
284 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||||||||||||| |||||| |||||||| |
|
|
| T |
751 |
atattatgatccttatgcacataatttggtataacgctgctttacggtttgttgatgtcc |
692 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 284
Target Start/End: Original strand, 11135870 - 11135929
Alignment:
| Q |
225 |
atatcatgatcctcatgcacataatctggtataacgctgctttaaggtttgatgatgtcc |
284 |
Q |
| |
|
|||| |||||||| |||| ||||||||||||||||||| | ||| |||||| |||||||| |
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|
| T |
11135870 |
atattatgatccttatgcgcataatctggtataacgctacgttacggtttgttgatgtcc |
11135929 |
T |
|
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