View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20824_high_34 (Length: 300)

Name: NF20824_high_34
Description: NF20824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20824_high_34
NF20824_high_34
[»] chr2 (1 HSPs)
chr2 (1-290)||(29946525-29946814)


Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 29946525 - 29946814
Alignment:
Q  1 acagtttcagcacgaagttaaagctcatgataataacatttcaaaagccacttgagttcaaaatatacatgtataacgataataaaacaacacagtcata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  29946525 acagtttcagcacgaagttaaagctcatgataataacatttcaaaagccacttgaattcaaaatatacatgtataacgataataatacaacacagtcata 29946624  T
Q  101 atgacttatcaattagagaagaaaagattctaacttttgcaacccattttccatgtgtgcatccagcgacgatattactctcggcaactgctccaaaacc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  29946625 atgacttatcaattagagaagaaaagattctaacttttgcaacccattttccatgtgtgcatccagagacgatattactctcggcaactgctctaaaacc 29946724  T
Q  201 tgtacaacaaaaccgaaaccattacacacacttcaaacgtttgctcacactcaacaacaacattacatcaattcaattacctgctctgtg 290  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  29946725 tgtacaacaaaaccaaaaccattacacacacttcaaacgtttgctcacactcaacaacaacatttcatcaattcaattacctgctgtgtg 29946814  T

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