View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20825_high_1 (Length: 434)
Name: NF20825_high_1
Description: NF20825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20825_high_1 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 30 - 434
Target Start/End: Original strand, 22729877 - 22730279
Alignment:
| Q |
30 |
aatattaataggtgatgtttttgagacacaatttatgttgtcaatcgggctagagttgaatgacccttgttcagttgtttgatatggatgtttgtatgca |
129 |
Q |
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| T |
22729877 |
aatattattaggtgatgtttttgagacacattttatgttgtcaatcgggctagagttgaatgacccttgttcagttgtttgatattgatgtttgtatgca |
22729976 |
T |
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| Q |
130 |
tttgatgtattgctttatgaggcttacacactttatcaattttgttgaaaagaaaagaagttagtgcatgccatgtgagaaactatagagcaaaagaatg |
229 |
Q |
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| T |
22729977 |
tttgatgtattgctttatgaggcttacac--tttatcaattttgttgaaaagaaaagaagttagtgcatgccatgtgagaaactatagagcaaaagaatg |
22730074 |
T |
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| Q |
230 |
accaaaaagtgtgtgcagtttctccgacagttgaaagtatgaaaccacttgaaaaattacctgtttgtcaggacctataggcctagagcagcacttacat |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
22730075 |
accaaaaagtgtgtgcagtttctccgacagttgaaagtatgaaaccacttgaaaaattacctgtttgtcaggacctataggcctagagcaacacttacat |
22730174 |
T |
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| Q |
330 |
taataacattggtaaataaataatcatgcaaaaagggaccacaagaacccccatcctttcaaatgtttctattctccatgtttgattggacaccatatag |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22730175 |
taataacattggtaaataaataatcatgcaaaaagggaccacaagaacccccatcctttcaaatgtttctattctccatgtttgattggacaccatatag |
22730274 |
T |
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| Q |
430 |
tttct |
434 |
Q |
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||||| |
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| T |
22730275 |
tttct |
22730279 |
T |
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