View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20825_high_2 (Length: 361)
Name: NF20825_high_2
Description: NF20825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20825_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 39731987 - 39731887
Alignment:
| Q |
30 |
ctagcctgtggtgatattattcattttgaaatgagagagaaccaacacagacccaagatgcaattacagttttgaaaacaaacatacatatacattccca |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39731987 |
ctagcctgtggtgatattattcattttgaaatgagagagaaccaacacagacccaaaatgcaattacagttttgaaaacaaacatacatatacattccca |
39731888 |
T |
|
| Q |
130 |
a |
130 |
Q |
| |
|
| |
|
|
| T |
39731887 |
a |
39731887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 252 - 313
Target Start/End: Complemental strand, 39731783 - 39731727
Alignment:
| Q |
252 |
gctaatgaaacctgataatggctagcctatatcagtgtgtcaacaaaagttgcttccttaat |
313 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39731783 |
gctaatgaaacctgataatggcta-----tatcagtgtgtcaacaaaagttgcttccttaat |
39731727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University