View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20825_high_4 (Length: 349)
Name: NF20825_high_4
Description: NF20825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20825_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 29 - 336
Target Start/End: Complemental strand, 42238473 - 42238166
Alignment:
| Q |
29 |
acatatatataccatgcatcaagtgaaatcaattggtgaaagtgacttaaaaatactagactacaattgaattataagtgggtgaaagaatgcatgacca |
128 |
Q |
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| T |
42238473 |
acatatatataccatgcatcaagtgaaatcaattggtgaaagtgacttaaaaatactagactacaaatgaattataagtgggtgaaagaatgcatcacca |
42238374 |
T |
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| Q |
129 |
ataaatattatacgattttctaaatcacacaataataaattataagatcgataaactagcatatattacttaatatttatctttggccatggtgttcaga |
228 |
Q |
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||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42238373 |
ataaatattatacgattttctaaatcacacagtaataaactataagatcgataagctagcatatattacttaatatttatctttggccatggtgttcaga |
42238274 |
T |
|
| Q |
229 |
attaatgaatgagtgaatggcaccggaaaggttgctaacagcggcgacaagggtggcgataccttgccggtgaacttcgttccgagattcctccatttga |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42238273 |
attaatgaatgagtgaatggcaccggaaaggttgctaacagcggcgacaagggtggcgataccttgccggtgaacttcgttccgagattcctccatttga |
42238174 |
T |
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| Q |
329 |
atccgtct |
336 |
Q |
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|||||||| |
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| T |
42238173 |
atccgtct |
42238166 |
T |
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