View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20826_high_1 (Length: 337)

Name: NF20826_high_1
Description: NF20826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20826_high_1
NF20826_high_1
[»] chr1 (2 HSPs)
chr1 (34-325)||(720608-720895)
chr1 (245-317)||(38880040-38880112)
[»] chr5 (1 HSPs)
chr5 (245-325)||(23946051-23946131)
[»] chr8 (1 HSPs)
chr8 (267-325)||(45211619-45211677)
[»] chr3 (3 HSPs)
chr3 (267-325)||(37144954-37145012)
chr3 (270-313)||(23425799-23425842)
chr3 (271-325)||(53607097-53607151)
[»] chr4 (2 HSPs)
chr4 (267-322)||(33805273-33805328)
chr4 (247-316)||(11239460-11239529)
[»] chr7 (2 HSPs)
chr7 (271-325)||(46830723-46830777)
chr7 (270-319)||(23206669-23206718)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 34 - 325
Target Start/End: Original strand, 720608 - 720895
Alignment:
Q  34 attgaagaggttgaaacttcaataataaaatagttggctttacatattgtttttgtactatgtattgggttgagttatctctttaattgttttcttttat 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  720608 attgaagaggttgaaacttcaataataaaatagttggctttacatattgtttttgtactatgtaatgggttgagttatctctttaattgttttcttttat 720707  T
Q  134 atatgtataatatagtggtgctttatttgctgttcaaaaattcgtgattacttgaagnnnnnnnntagtgattaggtgtaaattaaataataaatatatt 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||| ||||||||||    ||||||||    
T  720708 atatgtataatatagtggtgctttatttgctgttcaaaaattcgtgattacttgaagaaaaaaaatagtgattaggtttaaattaaat----aatatatt 720803  T
Q  234 cactaatatatggcagctgatcccattcttcatccctcttggtcttggatttggaatttgcaggttccggaaaagtacaagtttctcatctg 325  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||    
T  720804 cactaatatatggcagctgatcccattcctcacccctcttggtcttgaatttggaatttgcaggtcctggaaaagtacaagtttctcatctg 720895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 38880040 - 38880112
Alignment:
Q  245 ggcagctgatcccattcttcatccctcttggtcttggatttggaatttgcaggttccggaaaagtacaagttt 317  Q
    ||||||||||| ||||| ||| ||||||||||||||||||||||||||||| |||| | ||||||||||||||    
T  38880040 ggcagctgatctcattcctcacccctcttggtcttggatttggaatttgcaagttctgaaaaagtacaagttt 38880112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 245 - 325
Target Start/End: Original strand, 23946051 - 23946131
Alignment:
Q  245 ggcagctgatcccattcttcatccctcttggtcttggatttggaatttgcaggttccggaaaagtacaagtttctcatctg 325  Q
    ||||||||||  ||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23946051 ggcagctgatatcatccctcacccctcttggtcttggatttggaatttgcaggttccggaaaagtacaagtttctcatctg 23946131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 267 - 325
Target Start/End: Complemental strand, 45211677 - 45211619
Alignment:
Q  267 ccctcttggtcttggatttggaatttgcaggttccggaaaagtacaagtttctcatctg 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45211677 ccctcttggtcttggatttggaatttgcaggttccggaaaagtacaagtttctcatctg 45211619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 267 - 325
Target Start/End: Original strand, 37144954 - 37145012
Alignment:
Q  267 ccctcttggtcttggatttggaatttgcaggttccggaaaagtacaagtttctcatctg 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37144954 ccctcttggtcttggatttggaatttgcaggttccggaaaagtacaagtttctcatctg 37145012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 270 - 313
Target Start/End: Original strand, 23425799 - 23425842
Alignment:
Q  270 tcttggtcttggatttggaatttgcaggttccggaaaagtacaa 313  Q
    |||||||||||||||||||  |||||||||||||| ||||||||    
T  23425799 tcttggtcttggatttggacattgcaggttccggagaagtacaa 23425842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 325
Target Start/End: Complemental strand, 53607151 - 53607097
Alignment:
Q  271 cttggtcttggatttggaatttgcaggttccggaaaagtacaagtttctcatctg 325  Q
    ||||||||||||||||||   |  ||||||||||||||||||||||||| |||||    
T  53607151 cttggtcttggatttggagactaaaggttccggaaaagtacaagtttcttatctg 53607097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 33805273 - 33805328
Alignment:
Q  267 ccctcttggtcttggatttggaatttgcaggttccggaaaagtacaagtttctcat 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33805273 ccctcttggtcttggatttggaatttgcaggttccggaaaagtacaagtttctcat 33805328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 11239460 - 11239529
Alignment:
Q  247 cagctgatcccattcttcatccctcttggtcttggatttggaatttgcaggttccggaaaagtacaagtt 316  Q
    ||||| ||||||||| ||||| ||||||||||||||||||||  ||  |||| ||||||||||| |||||    
T  11239460 cagctaatcccattcctcatcactcttggtcttggatttggaggttaaaggtcccggaaaagtataagtt 11239529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 325
Target Start/End: Original strand, 46830723 - 46830777
Alignment:
Q  271 cttggtcttggatttggaatttgcaggttccggaaaagtacaagtttctcatctg 325  Q
    ||||||||||||||||||   |  ||||||||||||||||||||||||| |||||    
T  46830723 cttggtcttggatttggagactaaaggttccggaaaagtacaagtttcttatctg 46830777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 319
Target Start/End: Complemental strand, 23206718 - 23206669
Alignment:
Q  270 tcttggtcttggatttggaatttgcaggttccggaaaagtacaagtttct 319  Q
    ||||||||||||||||||| | ||||||| ||||| |||||||| |||||    
T  23206718 tcttggtcttggatttggactctgcaggtaccggagaagtacaaatttct 23206669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University